prot_H-elongata_contig19231.5321.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19231.5321.1
Unique Nameprot_H-elongata_contig19231.5321.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length218
Homology
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: D7G6D3_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D3_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 5.200e-118
Identity = 192/218 (88.07%), Postives = 203/218 (93.12%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQNG+DEDRRRLAVYCIKDA LPM+LMEKL+V+VNYIEMARVTGVPL+FLLSRGQQIKVFSMLLRK R+V LLIPN+P    HA  QETYEGATVIEPKKA Y+EPIATLDFASLYPSIMQAYNLCYSTLV   DKNKLKPDQY TSPSGDVFVKSEVTKGLLPAIL+ELL+ARKQAKRDMAAATDPMEKAVQNGRQLALKV ANS+YGFTGATVGQL
Sbjct:  503 LQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYIEMARVTGVPLNFLLSRGQQIKVFSMLLRKTRSVNLLIPNLPK---HAVDQETYEGATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTLVAGEDKNKLKPDQYLTSPSGDVFVKSEVTKGLLPAILDELLTARKQAKRDMAAATDPMEKAVQNGRQLALKVSANSVYGFTGATVGQL 717          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A6H5KUL9_9PHAE (DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL9_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 3.000e-110
Identity = 181/219 (82.65%), Postives = 195/219 (89.04%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVW----ANSIYGFTGATV 215
            LQNG+DEDRRRLAVYCIKDA LPM+LMEKL+V+VNYIEMARVTGVPL+FLLSRGQQIKVFSMLLRK R+V LLIPN+P    HA  QETYEGATVIEPKKA Y+EPIATLDFASLYPSIMQAYNLCYSTLV   DKNKLKPDQY TSPSGDVFVKSEVTKGLLPAIL+ELL+ARKQAKRDMAAATDPMEKAVQNGRQLALK      A+ +YG T + +
Sbjct:  366 LQNGSDEDRRRLAVYCIKDALLPMKLMEKLSVMVNYIEMARVTGVPLNFLLSRGQQIKVFSMLLRKTRSVNLLIPNLPK---HAVDQETYEGATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTLVAGEDKNKLKPDQYLTSPSGDVFVKSEVTKGLLPAILDELLTARKQAKRDMAAATDPMEKAVQNGRQLALKNGYDHDADVVYGDTDSVM 581          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A4D9CSP3_9STRA (DNA polymerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSP3_9STRA)

HSP 1 Score: 324 bits (830), Expect = 4.340e-100
Identity = 166/218 (76.15%), Postives = 188/218 (86.24%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQNGTDEDRRRLAVYCIKDA LP +LMEKL+V+VNY+EMARVTGVP++FLL+RGQQIKVFSMLLRKCR   LLIPN+P    +   + TYEGATVIEPKKA YQ+PIATLDFASLYPSIMQA+NLCYSTL+   +K  L P  Y T+PS + FVK  V KG+LP IL+ELL+ARK+AKRDMAAATDPMEKAVQNGRQLALK+ ANS+YGFTGATVGQL
Sbjct:  539 LQNGTDEDRRRLAVYCIKDALLPWKLMEKLSVLVNYVEMARVTGVPMAFLLTRGQQIKVFSMLLRKCRQSALLIPNLPK---NRQDEGTYEGATVIEPKKAFYQDPIATLDFASLYPSIMQAFNLCYSTLLSREEKQALPPSSYITTPSQESFVKPSVRKGILPLILDELLAARKRAKRDMAAATDPMEKAVQNGRQLALKISANSVYGFTGATVGQL 753          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A812URB4_SYMMI (DNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812URB4_SYMMI)

HSP 1 Score: 308 bits (789), Expect = 1.920e-98
Identity = 160/218 (73.39%), Postives = 181/218 (83.03%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQ G+D DR RLAVYC+KDA LP QLM KL+++VNYIEMARVTGVPL+FLL+RGQQIKVFSMLLRK R V LLIPNI        + + YEGATVI+PKKA Y+ PI+TLDFASLYPSIMQ YNLCYSTL+   D  +L  D Y+ SPSG  FVKSE  KG+LP IL+ELL+ARKQAK+DMAAATDPMEKAVQNGRQLALK+ ANS+YGFTGATVGQL
Sbjct:   67 LQMGSDADRHRLAVYCLKDAHLPQQLMVKLSILVNYIEMARVTGVPLNFLLTRGQQIKVFSMLLRKTRKVNLLIPNIAKHGG-GGEDQGYEGATVIDPKKAYYETPISTLDFASLYPSIMQGYNLCYSTLLSADDAARLPVDAYQRSPSGHYFVKSETKKGILPQILDELLAARKQAKKDMAAATDPMEKAVQNGRQLALKISANSVYGFTGATVGQL 283          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A418FQZ5_9STRA (DNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FQZ5_9STRA)

HSP 1 Score: 299 bits (765), Expect = 5.250e-98
Identity = 156/218 (71.56%), Postives = 173/218 (79.36%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQ GT +DR RLAVYC+KDA LP+ L++KL+ +VNYIEMARVTGVPL FL+ RGQQIKV+SMLLRKCR   L++PN+P  A        YEGATVIEP KA Y  PIATLDFASLYPSIMQ YNLCYSTLV   D  KL  D Y+TSPSGDVFV+    KG+LP ILEELLSARKQAKRDMA A D M KAVQNGRQLALK+ ANS+YGFTGA VGQL
Sbjct:   67 LQRGTADDRHRLAVYCLKDAVLPLTLLQKLSYLVNYIEMARVTGVPLDFLIDRGQQIKVYSMLLRKCRGAGLVVPNLPR-AGGGGDDMGYEGATVIEPVKAYYTVPIATLDFASLYPSIMQGYNLCYSTLVAPSDIGKLPEDAYQTSPSGDVFVRDTTKKGILPLILEELLSARKQAKRDMATAPDAMSKAVQNGRQLALKISANSVYGFTGANVGQL 283          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: K0SGP2_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGP2_THAOC)

HSP 1 Score: 291 bits (745), Expect = 2.260e-95
Identity = 149/218 (68.35%), Postives = 176/218 (80.73%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQ G+D DR RLAVYC+KDA LP +LM+KL+V++NY+EMARVTGVP+SFL+SRGQQIKVFSM+LRKCR V LL+P +    S  A  E YEGATV++P K  YQ PIATLDFASLYPSIMQAYNLCYST+V  +D   + P +Y+ S +G  FV SEV KG+LP IL ELLSARK+AKRDM  A +  EKAVQNGRQLALK+ ANS+YGFTGA+VGQL
Sbjct:   39 LQAGSDADRHRLAVYCLKDANLPQRLMDKLSVLINYVEMARVTGVPVSFLISRGQQIKVFSMILRKCRDVNLLVPTLKK--SGPAGDEGYEGATVLDPIKQFYQVPIATLDFASLYPSIMQAYNLCYSTMVSGQDAKNVDPSKYKKSENGHAFVHSEVKKGILPTILGELLSARKRAKRDMKNAPNEFEKAVQNGRQLALKISANSVYGFTGASVGQL 254          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A3M6VP77_9STRA (DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VP77_9STRA)

HSP 1 Score: 307 bits (786), Expect = 2.080e-94
Identity = 156/218 (71.56%), Postives = 181/218 (83.03%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQ G+D+DR RLAVYC+KDA LP++L++KL+ +VNYIEMARV+GVP+ FL+ RGQQIKVFSMLLRKC+   L++P +P   S       YEGATVIEPKKA Y  PIATLDFASLYPSIMQAYNLCYSTLV   D +KL P  Y+ SPSGD+FV S++ KG+LP ILEE+L+ARKQAKRDM AATDPMEKAVQNGRQLALKV ANS+YGFTGA VGQL
Sbjct:  480 LQRGSDDDRHRLAVYCLKDAYLPLRLLDKLSYLVNYIEMARVSGVPIDFLIERGQQIKVFSMLLRKCKDASLVVPTLPR--SQINDDAGYEGATVIEPKKAFYSVPIATLDFASLYPSIMQAYNLCYSTLVAPGDADKLAPGAYQKSPSGDIFVTSKMKKGILPLILEEVLAARKQAKRDMNAATDPMEKAVQNGRQLALKVSANSVYGFTGAIVGQL 695          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A024USU1_9STRA (DNA polymerase n=16 Tax=Aphanomyces TaxID=100860 RepID=A0A024USU1_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.720e-93
Identity = 159/218 (72.94%), Postives = 176/218 (80.73%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQ GTD+DR RLAVYC+KDA LP+ L++KL+ +VNYIEMARVTGVPL FL+ RGQQIKV+SMLLRKCR   L++PN+P   +       YEGATVIEP KA Y  PIATLDFASLYPSIMQ YNLCYSTLV   D NKL  D Y+TSPSGDVFV+S   KG+LP ILEELLSARKQAKRDMA A D M KAVQNGRQLALKV ANS+YGFTGA VGQL
Sbjct:  440 LQRGTDDDRHRLAVYCLKDAVLPLTLLQKLSYLVNYIEMARVTGVPLDFLIDRGQQIKVYSMLLRKCRGAGLVVPNLPR--AGGGDDIGYEGATVIEPVKAYYTVPIATLDFASLYPSIMQGYNLCYSTLVAPSDINKLPVDAYQTSPSGDVFVRSATKKGILPLILEELLSARKQAKRDMATAPDAMSKAVQNGRQLALKVSANSVYGFTGANVGQL 655          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: A0A067CN59_SAPPC (DNA polymerase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CN59_SAPPC)

HSP 1 Score: 303 bits (777), Expect = 1.790e-93
Identity = 157/215 (73.02%), Postives = 173/215 (80.47%), Query Frame = 0
Query:    4 GTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            G+D+DR RLAVYC+KDA LP+ L++KL+ +VNY+EMARVTGVPL FL+ RGQQIKV+SMLLRKCR   L++PN+P   S A     YEGATVIEP KA Y  PIATLDFASLYPSIMQ YNLCYSTLV   D   L PD Y TSPSGDVFVKS   KG+LP ILEELLSARKQAKRDMA A D M KAVQNGRQLALKV ANS+YGFTGA VGQL
Sbjct:  422 GSDDDRHRLAVYCLKDAMLPLTLLQKLSYLVNYVEMARVTGVPLDFLIDRGQQIKVYSMLLRKCREASLVVPNLPR--SGAGDDAGYEGATVIEPMKAYYTMPIATLDFASLYPSIMQGYNLCYSTLVAPGDVGNLPPDAYETSPSGDVFVKSATKKGILPLILEELLSARKQAKRDMATAPDAMTKAVQNGRQLALKVSANSVYGFTGANVGQL 634          
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Match: F0X153_9STRA (DNA polymerase n=3 Tax=Albugo TaxID=65356 RepID=F0X153_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.920e-93
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 0
Query:    1 LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFLLSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKKALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSGDVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLALKVWANSIYGFTGATVGQL 218
            LQ GTD+DR RLAVYC+KDA LP+QL+  L+++VNYIEMARV GVP+ +LL RGQQIKV+SMLLRKC+   LL+P +    +  +    YEGATVIEP KA Y  PIATLDFASLYPSIMQA+NLCYSTLV   D +KL P QY+TSPSGDVFVK++  KG+LP I+EELLSARKQAK DM+ ATDPMEKAVQNGRQLALK+ ANS+YGFTGA VGQL
Sbjct:  471 LQRGTDDDRHRLAVYCLKDASLPLQLLHNLSLLVNYIEMARVCGVPIDYLLERGQQIKVYSMLLRKCKGANLLVPTLQRSQNANSGDAGYEGATVIEPIKAYYTVPIATLDFASLYPSIMQAHNLCYSTLVAPNDVDKLNPLQYQTSPSGDVFVKADTRKGILPMIIEELLSARKQAKYDMSRATDPMEKAVQNGRQLALKISANSVYGFTGAVVGQL 688          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19231.5321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D3_ECTSI5.200e-11888.07DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KUL9_9PHAE3.000e-11082.65DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A4D9CSP3_9STRA4.340e-10076.15DNA polymerase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A812URB4_SYMMI1.920e-9873.39DNA polymerase n=1 Tax=Symbiodinium microadriaticu... [more]
A0A418FQZ5_9STRA5.250e-9871.56DNA polymerase n=1 Tax=Aphanomyces astaci TaxID=11... [more]
K0SGP2_THAOC2.260e-9568.35DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A3M6VP77_9STRA2.080e-9471.56DNA polymerase n=6 Tax=Peronosporaceae TaxID=4777 ... [more]
A0A024USU1_9STRA1.720e-9372.94DNA polymerase n=16 Tax=Aphanomyces TaxID=100860 R... [more]
A0A067CN59_SAPPC1.790e-9373.02DNA polymerase n=3 Tax=Saprolegniaceae TaxID=4764 ... [more]
F0X153_9STRA1.920e-9370.64DNA polymerase n=3 Tax=Albugo TaxID=65356 RepID=F0... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006172DNA-directed DNA polymerase, family BPRINTSPR00106DNAPOLBcoord: 197..209
score: 56.26
coord: 107..120
score: 58.69
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..43
e-value: 4.2E-34
score: 119.8
NoneNo IPR availableGENE3D1.10.287.690coord: 161..213
e-value: 2.2E-44
score: 153.6
NoneNo IPR availableGENE3D3.30.342.10coord: 44..75
e-value: 4.2E-34
score: 119.8
NoneNo IPR availablePANTHERPTHR10322DNA POLYMERASE CATALYTIC SUBUNITcoord: 1..218
NoneNo IPR availablePANTHERPTHR10322:SF23DNA POLYMERASE DELTA CATALYTIC SUBUNITcoord: 1..218
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 54..216
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 45..218
e-value: 1.7E-59
score: 201.8
IPR023211DNA polymerase, palm domain superfamilyGENE3D3.90.1600.10coord: 89..218
e-value: 2.2E-44
score: 153.6
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19231contigH-elongata_contig19231:5423..6909 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19231.5321.1mRNA_H-elongata_contig19231.5321.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19231 5423..6909 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19231.5321.1 ID=prot_H-elongata_contig19231.5321.1|Name=mRNA_H-elongata_contig19231.5321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
LQNGTDEDRRRLAVYCIKDAQLPMQLMEKLNVIVNYIEMARVTGVPLSFL
LSRGQQIKVFSMLLRKCRTVKLLIPNIPNFASHAAKQETYEGATVIEPKK
ALYQEPIATLDFASLYPSIMQAYNLCYSTLVWNRDKNKLKPDQYRTSPSG
DVFVKSEVTKGLLPAILEELLSARKQAKRDMAAATDPMEKAVQNGRQLAL
KVWANSIYGFTGATVGQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006172DNA-dir_DNA_pol_B
IPR036397RNaseH_sf
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR023211DNA_pol_palm_dom_sf
IPR012337RNaseH-like_sf