prot_H-elongata_contig19198.5315.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19198.5315.1
Unique Nameprot_H-elongata_contig19198.5315.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length334
Homology
BLAST of mRNA_H-elongata_contig19198.5315.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.810e-77
Identity = 180/389 (46.27%), Postives = 209/389 (53.73%), Query Frame = 0
Query:    1 MKLFEGDMAGLQSDITTLQRHAEGKSRASPPVNSQRRKHCQHIVTALQNSAQGHTKAFRDALLLRAAVEKQQTDRQRIFSHSRGVAPATQLDYPLFGGNS------------------------------------GVRNRGARRRVEPPPPFVPRPLPPQSPSRLSEGESGRTFPS--------------NFDSGSASVIHTSAPPAQSASIPMVAKPMVRPELGGGSSSSGIKGETVSREIMSPFGGAANFSQSACSPGSLGGRAGGFGGKQGGGQVPLPP------TEPYRAGNGAFGLRKRLGQDGGIDGEEEARRASWQVQVQEDARDRVEESHKVEKMIGDLGQMFSRFSTMVAAQDEVVMRIEDDVEAAHAFAAEGQANLAK 333
            MKLFEGDMAGLQ DI++LQR+A+G +R SPP NSQR+ HC  IVT L+ SAQ HTKAFRDAL+LRAAVEKQQ +RQR FSHSRGVAPATQLDYPLFG +                                     G R  G    V P P            +R   G  G ++P               N +  + S            ++P   +P          + S   G          FG A  +   A   GS  GRA              PP      TE  R G  A GLRKR G++ G D EEE+RRA+WQVQVQED++ RV+ESHKVEKMIGDLG MFSRFSTMVAAQ+EVVM IEDDVEAAHAFA EGQA+LAK
Sbjct:   89 MKLFEGDMAGLQKDISSLQRYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSGXXXXXXXXXXXXTANLPSXXXXXXXXXXXDNKGHKHGPRKGGKAASVLPFPSG-------NGGTRAGGGTGGSSWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYDAVGAMPRATEPAAXXXXXXXRTDSN-GGFRAGPHTAPTFGSANGYVPPAAGGGS--GRA----------HAAAPPGFPPLRTEASRGGGRATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAK 457          
BLAST of mRNA_H-elongata_contig19198.5315.1 vs. uniprot
Match: A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.190e-9
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 0
Query:  288 MIGDLGQMFSRFSTMVAAQDEVVMRIEDDVEAAHAFAAEGQANLAK 333
            MIG+LG MFS+FS +VAAQ+E V+ IEDDVE AH FA +G A+L++
Sbjct:    1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSR 46          
BLAST of mRNA_H-elongata_contig19198.5315.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 57.4 bits (137), Expect = 4.880e-7
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 0
Query:  271 VQEDARDRVEESHKVEKMIGDLGQMFSRFSTMVAAQDEVVMRIEDDVEAAHAFAAEGQANLAK 333
            +++ +R R++ +H +EK IG LG++FSRFS++VA Q EVV R++DDVE A      G A L K
Sbjct:    2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLK 64          
BLAST of mRNA_H-elongata_contig19198.5315.1 vs. uniprot
Match: I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)

HSP 1 Score: 55.1 bits (131), Expect = 5.540e-6
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query:  272 QEDARDRVEESHKVEKMIGDLGQMFSRFSTMVAAQDEVVMRIEDDVEAAHAFAAEGQANL 331
            Q D   R+ E+  VEK I +LGQ FSR + +VAAQ EVVMRI+DD+EAA     +G A +
Sbjct:   25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEM 84          
BLAST of mRNA_H-elongata_contig19198.5315.1 vs. uniprot
Match: A0A7S4E5R4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5R4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.830e-5
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 0
Query:  268 QVQVQEDARDRVEESHKVEKMIGDLGQMFSRFSTMVAAQDEVVMRIEDDVEAAHAFAAEGQANLAK 333
            Q+ ++++AR R++ +  VEK IG LG++FSRF+ +VA Q EVV R++DDVEA+ A    G + L +
Sbjct:  233 QLVLEQNARQRLDHALDVEKEIGKLGEVFSRFAGLVAQQAEVVERLDDDVEASRADVDAGHSELTR 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19198.5315.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE1.810e-7746.27t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835ZFW2_9STRA5.190e-963.04t-SNARE coiled-coil homology domain-containing pro... [more]
F0Y6L6_AURAN4.880e-747.62t-SNARE coiled-coil homology domain-containing pro... [more]
I2CQ48_NANGC5.540e-651.67t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S4E5R4_9STRA2.830e-545.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 267..333
e-value: 1.1E-4
score: 31.5
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 272..333
score: 12.54
NoneNo IPR availableGENE3D1.20.5.110coord: 273..333
e-value: 1.1E-10
score: 43.1
NoneNo IPR availablePANTHERPTHR19957:SF3SYNTAXIN-5coord: 6..333
NoneNo IPR availablePANTHERPTHR19957SYNTAXINcoord: 6..333
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 269..327

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19198contigH-elongata_contig19198:3138..5851 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19198.5315.1mRNA_H-elongata_contig19198.5315.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19198 3117..5929 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19198.5315.1 ID=prot_H-elongata_contig19198.5315.1|Name=mRNA_H-elongata_contig19198.5315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
MKLFEGDMAGLQSDITTLQRHAEGKSRASPPVNSQRRKHCQHIVTALQNS
AQGHTKAFRDALLLRAAVEKQQTDRQRIFSHSRGVAPATQLDYPLFGGNS
GVRNRGARRRVEPPPPFVPRPLPPQSPSRLSEGESGRTFPSNFDSGSASV
IHTSAPPAQSASIPMVAKPMVRPELGGGSSSSGIKGETVSREIMSPFGGA
ANFSQSACSPGSLGGRAGGFGGKQGGGQVPLPPTEPYRAGNGAFGLRKRL
GQDGGIDGEEEARRASWQVQVQEDARDRVEESHKVEKMIGDLGQMFSRFS
TMVAAQDEVVMRIEDDVEAAHAFAAEGQANLAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR010989SNARE