prot_H-elongata_contig191775.5307.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig191775.5307.1
Unique Nameprot_H-elongata_contig191775.5307.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length340
Homology
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BLAST of mRNA_H-elongata_contig191775.5307.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.100e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0 
Query:  279 GMVDLMRREITAREALLLGPTLRSATGVTCLRLCYNHLKDGGAEAVSSAIENLPSLHTMDLG 340
            GMVDLMRREITAREALLLGP L +ATGVTCL+LCYNHL+DGGAEAVS AIE  PSLHTMDLG
Sbjct:  287 GMVDLMRREITAREALLLGPILWAATGVTCLKLCYNHLRDGGAEAVSGAIERHPSLHTMDLG 348
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BLAST of mRNA_H-elongata_contig191775.5307.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.160e-22
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0 
Query:  279 GMVDLMRREITAREALLLGPTLRSATGVTCLRLCYNHLKDGGAEAVSSAIENLPSLHTMDLG 340
            GMVDLMRREITAREALLLGP L +ATGVTCL+LCYNHL+DGGAEAVS AIE  PSLHTMDLG
Sbjct:  276 GMVDLMRREITAREALLLGPILWAATGVTCLKLCYNHLRDGGAEAVSGAIERHPSLHTMDLG 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191775.5307.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK51_ECTSI1.100e-2287.10Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVK7_9PHAE1.160e-2287.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 279..340
e-value: 9.8E-7
score: 29.8
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 281..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191775contigH-elongata_contig191775:11..1030 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191775.5307.1mRNA_H-elongata_contig191775.5307.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig191775 11..1030 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig191775.5307.1 ID=prot_H-elongata_contig191775.5307.1|Name=mRNA_H-elongata_contig191775.5307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
SSATAAQQSRCDETDLLALLKRLGLALSPPSTASPRGGNGIRDRDRDKDE
DMDCGGEDMDCGQEEMDCGREEMDASSSKPAPDDESYPPKGPRGSRRGGS
SGVAATAGTGSGAPPRRARQHLRRQLAEGGGDRDRVGGGRSNRLDAREPS
ARRNRGTSIGHESEQRLTRGSAGGGGGCRNGDVGDYVGGKSSSNSGTTSN
DKGNRRAAVSMQTAGEPRSGSIEPGNGRGFGKGVACGVVKAVAGAGNGGS
TAVNREPRKEALQPKGEGGLGTAAAASKGMVDLMRREITAREALLLGPTL
RSATGVTCLRLCYNHLKDGGAEAVSSAIENLPSLHTMDLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf