prot_H-elongata_contig19175.5306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19175.5306.1
Unique Nameprot_H-elongata_contig19175.5306.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length280
Homology
BLAST of mRNA_H-elongata_contig19175.5306.1 vs. uniprot
Match: D7G868_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G868_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.860e-71
Identity = 143/294 (48.64%), Postives = 186/294 (63.27%), Query Frame = 0
Query:    1 SISTWEIWWDIERERRGIHAASSSRFPGSMVREDIPMGVEENVERLCVAAFLRGHVPKGLMPPGTTPEESYHRYLVLPPSLAKLRHEQLCREASRPISSALRSRGFSLVRHLLPLSKLEHLFTEAGADEEETLAAVAVARELSPLSRSRCETESGSWSGK-LFSPLSSFTIQSLDGIQKNGGKKNWHAAHQKLSGTNVNNAKGEAEEECEASGKEMVTMTT-------------RAKDKRLPRISVEGLGLHGSMGEKYGICGGWDPRRWTLRPEEWFKPPGSMIKRRWENGAK 280
            S S WE  WD ERE+RG+   + SRFPGS+VR+D+P G+ E VERLC AAFLRGHVP GLMP GTTPEE+Y RYL LPPSLAK+RHEQLC EAS+P++SALR+RG++++  LLPLSKLEHLF++AG+   ETLAAV++A E+ P    R     G+ SG  LFSPLS F+ + L   +            ++  G + +    E+  +  + G   VT  +              AK K L RIS++GL L           G WDP R+T RPEEW +PP S+IK+RW++ AK
Sbjct:  376 STSGWESVWDAEREKRGLTGDAGSRFPGSLVRQDMPSGLAETVERLCAAAFLRGHVPHGLMPKGTTPEEAYRRYLELPPSLAKIRHEQLCTEASQPVASALRARGYTVLEQLLPLSKLEHLFSQAGSGASETLAAVSIASEIKP---KRGVGGCGNGSGDDLFSPLSPFSRRCLARSRAAPISTQRSPRSRRREGLD-DCVSDESVRKDGSRGSGRVTSRSXXXXXXXXXXXSGEAKKKGLLRISMQGLELPSRAAGMEQGNGRWDPSRYTSRPEEWIRPPPSVIKQRWDDSAK 665          
BLAST of mRNA_H-elongata_contig19175.5306.1 vs. uniprot
Match: A0A836CBX2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.890e-17
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 0
Query:   12 ERERRGIHAASSSRFPGSMV----------------------REDIPMGVEENVERLCVAAFLRGHVPKGLMPPGTTPEESYHRYLVLPPSLAKLRHEQLCREASRPISSALRSRGFSLVRHLLPLSKLEHLFTEAGADEEETLAAVAVAREL 142
            ER+ R +  A+S+RF G+                          DIP G+ +   RL  AA LR  VP   MP GT+ E ++  YL LPPSLAK++HEQ   +A+RP ++AL + GF L+ HL+P+SK+  +  E G      LAA  +A EL
Sbjct: 1289 ERKARHLDHAASTRFAGASALTXXXXXXXXXXXXXXXXXXXXXRDIPGGLHDCTGRLLRAALLRSFVPS-TMPAGTSAEIAFRHYLALPPSLAKIKHEQDAAKAARPHAAALSAAGFHLIGHLMPISKMARVMQELGVPAAAILAAQDLAEEL 1440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19175.5306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G868_ECTSI1.860e-7148.64C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836CBX2_9STRA4.890e-1737.91C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19175contigH-elongata_contig19175:402..1580 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19175.5306.1mRNA_H-elongata_contig19175.5306.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19175 402..1580 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19175.5306.1 ID=prot_H-elongata_contig19175.5306.1|Name=mRNA_H-elongata_contig19175.5306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
SISTWEIWWDIERERRGIHAASSSRFPGSMVREDIPMGVEENVERLCVAA
FLRGHVPKGLMPPGTTPEESYHRYLVLPPSLAKLRHEQLCREASRPISSA
LRSRGFSLVRHLLPLSKLEHLFTEAGADEEETLAAVAVARELSPLSRSRC
ETESGSWSGKLFSPLSSFTIQSLDGIQKNGGKKNWHAAHQKLSGTNVNNA
KGEAEEECEASGKEMVTMTTRAKDKRLPRISVEGLGLHGSMGEKYGICGG
WDPRRWTLRPEEWFKPPGSMIKRRWENGAK
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