prot_H-elongata_contig191163.5281.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig191163.5281.1
Unique Nameprot_H-elongata_contig191163.5281.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.340e-62
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            +GIETVRRDGCPL+VK+LEKVLR+LF TKDLSQVKGYL RQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMA+DPRAEPKYCER+PYVVVAGPVGARLMDLV
Sbjct: 2819 KGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERIPYVVVAGPVGARLMDLV 2932          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.500e-62
Identity = 107/114 (93.86%), Postives = 111/114 (97.37%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            +GIETVRRDGCPL+VK+LEKVLR+LF TKDLSQVKGYL RQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMA DPRAEPKYCERVPYVVVAGPVGARLMDLV
Sbjct: 2678 KGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMAIDPRAEPKYCERVPYVVVAGPVGARLMDLV 2791          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A8J4F9P8_9CHLO (DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4F9P8_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 1.800e-41
Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            +GIETVRRD CP V K+LE+ LR+LF  +DL+ VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   +PP+A+VA+KAMA+DPRAEP+Y ERVPYVVV G  GARL+DLV
Sbjct:  563 KGIETVRRDSCPAVAKMLEQSLRLLFTARDLTAVKTYLRRQWTKILSNRVSVRDFIFAKEVRLGTYSANAATIPPAAVVATKAMAADPRAEPRYAERVPYVVVHGEPGARLVDLV 677          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A0D2LUE3_9CHLO (DNA-directed DNA polymerase (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LUE3_9CHLO)

HSP 1 Score: 145 bits (365), Expect = 4.350e-41
Identity = 71/114 (62.28%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDL 113
            +GIETVRRDGCP V K+LE VLR+LF+T DLS V+ Y  RQW +IL +R ++ DF+F KEVRLGTY+ +   +PP+A+VA++AMA+DPRAEP++ ERVPYVVV G   ARL+DL
Sbjct:  109 KGIETVRRDGCPAVSKMLESVLRVLFSTADLSLVRSYCARQWAKILANRVSLQDFVFCKEVRLGTYSVNAATLPPAAVVAARAMAADPRAEPRHGERVPYVVVYGEPNARLVDL 222          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A7J7QK52_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QK52_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 6.650e-41
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYA-SDVYMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            +GIETVRRDGCP V K+LE  LR LF T+DLS VK Y  RQW +IL++R +V DF+F KEVRLG+YA S   +PP+AIVA+KAMA+DPRAEP+Y ERVPYVVVAG  G+RL+DLV
Sbjct: 3195 KGIETVRRDGCPAVSKMLEACLRQLFTTRDLSAVKDYCTRQWAKILSNRVSVQDFVFCKEVRLGSYAPSASSLPPAAIVAAKAMAADPRAEPRYGERVPYVVVAGAPGSRLIDLV 3309          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A383VJ50_TETOB (DNA polymerase zeta catalytic subunit n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJ50_TETOB)

HSP 1 Score: 153 bits (386), Expect = 9.060e-41
Identity = 77/115 (66.96%), Postives = 94/115 (81.74%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            +GIETVRRDGCP V K+LE  LR LF ++DLS VKGY  RQW +IL++R +V DF+F KEVRLG+YA     +PP+AIVA+KAMA+DPRAEP+Y ERVPYVVVAG  G+RL+DLV
Sbjct: 3262 KGIETVRRDGCPAVSKMLEACLRELFTSRDLSAVKGYCTRQWAKILSNRVSVQDFVFCKEVRLGSYAPTASSLPPAAIVAAKAMAADPRAEPRYGERVPYVVVAGAPGSRLIDLV 3376          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A7S2T8Z2_9CHLO (DNA-directed DNA polymerase (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8Z2_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 1.320e-40
Identity = 73/115 (63.48%), Postives = 91/115 (79.13%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDV-YMPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            +GIET+RRD CP V K+LE+ LR+LF + DLS VK YL +QW +I   R ++ DF+FAKEVRLGTY++    +PP+AIVA+KAMA DPRAEPKY ERVPYVVV G  GARL+D+V
Sbjct:  276 KGIETIRRDSCPAVAKLLERSLRILFESADLSLVKRYLLKQWGKIFKSRVSIQDFVFAKEVRLGTYSAKASVVPPAAIVAAKAMALDPRAEPKYAERVPYVVVHGEPGARLVDMV 390          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A8IZI8_CHLRE (DNA polymerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZI8_CHLRE)

HSP 1 Score: 152 bits (383), Expect = 1.430e-40
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMD 112
            +GIETVRRD CP V K+LE+ +R+LF +KDLS VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   MPP+A VA++AMA+DPRAEPKY ERVPYVVV    GARL+D
Sbjct:  476 KGIETVRRDSCPAVAKLLEQSIRLLFGSKDLSGVKSYLQRQWTKILSNRVSVQDFIFAKEVRLGTYSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGARLVD 588          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 1.700e-40
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    1 QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMD 112
            +GIETVRRD CP V K+LE+ +R+LF +KDLS VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   MPP+A VA++AMA+DPRAEPKY ERVPYVVV    GARL+D
Sbjct: 5718 KGIETVRRDSCPAVAKLLEQSIRLLFGSKDLSAVKAYLRRQWTKILSNRVSVQDFIFAKEVRLGTYSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGARLVD 5830          
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Match: D8UAI7_VOLCA (DNA polymerase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UAI7_VOLCA)

HSP 1 Score: 151 bits (382), Expect = 1.990e-40
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 0
Query:    4 ETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMASDPRAEPKYCERVPYVVVAGPVGARLMDLV 114
            ETVRRD CP V K+LE+ LR+LF ++DLS VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   +PP+A+VA+KAMA DPRAEP+Y ERVPYVVV G  GARL+DLV
Sbjct:  481 ETVRRDSCPAVAKLLEQSLRLLFGSRDLSDVKTYLRRQWTKILSNRVSVQDFIFAKEVRLGTYSANAATIPPAAVVATKAMAVDPRAEPRYAERVPYVVVYGEPGARLVDLV 592          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191163.5281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G846_ECTSI1.340e-6292.98DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A6H5L0N9_9PHAE2.500e-6293.86DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A8J4F9P8_9CHLO1.800e-4166.96DNA polymerase (Fragment) n=2 Tax=Volvox TaxID=306... [more]
A0A0D2LUE3_9CHLO4.350e-4162.28DNA-directed DNA polymerase (Fragment) n=1 Tax=Mon... [more]
A0A7J7QK52_9CHLO6.650e-4167.83DNA polymerase zeta catalytic subunit n=1 Tax=Scen... [more]
A0A383VJ50_TETOB9.060e-4166.96DNA polymerase zeta catalytic subunit n=1 Tax=Tetr... [more]
A0A7S2T8Z2_9CHLO1.320e-4063.48DNA-directed DNA polymerase (Fragment) n=1 Tax=Chl... [more]
A8IZI8_CHLRE1.430e-4067.26DNA polymerase (Fragment) n=1 Tax=Chlamydomonas re... [more]
A0A835WRV5_9CHLO1.700e-4067.26DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
D8UAI7_VOLCA1.990e-4067.86DNA polymerase (Fragment) n=1 Tax=Volvox carteri f... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042087DNA polymerase family B, C-terminal domainGENE3D1.10.132.60coord: 2..115
e-value: 1.3E-28
score: 101.7
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 1..104
e-value: 1.2E-12
score: 47.4
IPR030559DNA polymerase zeta catalytic subunitPANTHERPTHR45812FAMILY NOT NAMEDcoord: 2..115
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191163contigH-elongata_contig191163:276..1083 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191163.5281.1mRNA_H-elongata_contig191163.5281.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig191163 276..1083 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig191163.5281.1 ID=prot_H-elongata_contig191163.5281.1|Name=mRNA_H-elongata_contig191163.5281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
QGIETVRRDGCPLVVKILEKVLRMLFNTKDLSQVKGYLCRQWTRILTDRA
AVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMASDPRAEPKYCERVPYV
VVAGPVGARLMDLVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042087DNA_pol_B_C
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR030559PolZ_Rev3