prot_H-elongata_contig18976.5227.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18976.5227.1
Unique Nameprot_H-elongata_contig18976.5227.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length174
Homology
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 8.990e-52
Identity = 108/199 (54.27%), Postives = 125/199 (62.81%), Query Frame = 0
Query:   10 IVHDIRASARVPEKKDYITGMRDVKKNMTKKLARLLEGEHVCIASDGWTSCANDTYISLTVCLITSAWELIP-----------------------------------------------MGRLLE-QSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVT 160
            +VH IR SARVPEKKD +T MR VKK M +K++RL+EGE VCI SDGWTSCANDTY+SLT  LITSAW+L+                                                MGRLL   + V T IGC N+RLEST+SIVFNGPRVKKVM L RGLVTRY TS+Q A+RL QFV+ Y GV+ K+VIQDVVT
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199          
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.190e-18
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   79 LIPMGRLLEQSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLT 165
            ++  GRLLE++   +H+GC+ HR ES TS  F GP V K +AL RG+VTRY  S+Q +NRL Q   I   VE+KKV+QDV TRW  T
Sbjct:   70 MVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQ-VERKKVVQDVETRWWST 155          
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.970e-18
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 0
Query:   44 LLEGEHVCIASDGWTSCANDTYISLTVCLITSAWELIPMGRLLEQSGVCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL 173
            L+E     IA +G TS    T  + T C       ++  GRLLE++   TH+GC+ HRLES TS  F GP V K +AL R +VTRY  S+Q ++RL Q   I   VE+KKV+QDV TRW  T   +  LL
Sbjct:   98 LVEAVKAMIARNGLTS---RTVATTTDC----EPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQ-VERKKVVQDVETRWWSTYASICRLL 219          
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.240e-14
Identity = 52/104 (50.00%), Postives = 60/104 (57.69%), Query Frame = 0
Query:   71 CLITSAWELIPMGRLLEQSG-VCTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL 173
            C+      +I  GRLLE  G   +HIGC NHR+ESTTS VFNG R    + L R LV RY  S+QMA RL Q   I   +E   V+QDV TRW  T  MV  LL
Sbjct:  109 CVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNG-RSLGALGLARTLVGRYKKSSQMAARLVQLCGILQ-MEPLSVMQDVETRWWSTWAMVVRLL 210          
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.040e-13
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0
Query:   68 LTVCLITSAWELIPMGRLLEQSGV-CTHIGCYNHRLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVEKKKVIQDVVTRWSLTCTMVGWLL 173
            +T C+      ++  GRLLE  G    HIGC NHR+ESTTS VFNG  +   +A  R +V RY  S+QM+ RLA F+ I   +    V+QDV TRW  +  M+  LL
Sbjct:  142 VTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILK-LSPLSVLQDVETRWWSSWAMIERLL 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18976.5227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE8.990e-5254.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE1.190e-1852.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE1.970e-1844.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI3.240e-1450.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE2.040e-1343.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46169FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR46169:SF3coord: 1..78
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 39..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18976contigH-elongata_contig18976:487..1149 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18976.5227.1mRNA_H-elongata_contig18976.5227.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18976 487..1314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18976.5227.1 ID=prot_H-elongata_contig18976.5227.1|Name=mRNA_H-elongata_contig18976.5227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
MLEDVHFRSIVHDIRASARVPEKKDYITGMRDVKKNMTKKLARLLEGEHV
CIASDGWTSCANDTYISLTVCLITSAWELIPMGRLLEQSGVCTHIGCYNH
RLESTTSIVFNGPRVKKVMALTRGLVTRYLTSNQMANRLAQFVQIYPGVE
KKKVIQDVVTRWSLTCTMVGWLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf