prot_H-elongata_contig18919.5194.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18919.5194.1
Unique Nameprot_H-elongata_contig18919.5194.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length959
Homology
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BLAST of mRNA_H-elongata_contig18919.5194.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.230e-78
Identity = 134/237 (56.54%), Postives = 174/237 (73.42%), Query Frame = 0 
Query:  593 STHVTVCSYCNTPPLKDNPVAFCEECPRRLCVKCLRNNI--QGTELNCGGLDPRTLNLLEGRGGDIFVEECPWCLRQSDLEFTPPSLGESPMKHLLQELMRHDLSRCFREPVDVEEHPDYLKAIGRNSMMDLHTMMSKLESRKYPRRRGPGQFVEDLCKIWRNCRKFAGCDELGQSLHGTSVPGIVRCALILEAISNKYVQSYISDKCDTE-WPESAWDYYRQRRKREHEEARLKQV 826
            S+H+  C+ C     + +P+  CE CPR  C +CL   +  QG EL   G D R+L  L G+ GDI +  CP C R  D EF PP  G +PM HLL EL+RHDLS CFREPVD+ +HPDY+++IGRN+MMDL TM+SKL+ ++YPRRRGPGQF EDL +IWRNCR+FAGCDELG+  +G +VPGIVRCAL LEA+S+K++ SY+SD  +T  W ES WD++RQR++RE+ EAR KQ+
Sbjct:  334 SSHLMDCASCQHSLPEGDPIGRCERCPRSFCSQCLERGLVEQGVELEALGQDCRSL--LNGKQGDISIARCPECFRGKDNEFAPPPPGGAPMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKLQGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRPHYGNTVPGIVRCALTLEAMSDKFISSYMSDNQETAAWQESTWDFHRQRQERENAEARRKQL 568
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BLAST of mRNA_H-elongata_contig18919.5194.1 vs. uniprot
Match: A0A8H5BMH4_9AGAR (Histone acetyltransferase GCN5 n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BMH4_9AGAR)

HSP 1 Score: 63.2 bits (152), Expect = 2.400e-6
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0 
Query:  682 MKHLLQELMRHDLSRCFREPVDVEEHPDYLKAIGRNSMMDLHTMMSKLESRKYPRRRGPGQFVEDLCKIWRNCRKF 757
            M+  L  L  H LS  FREPV++EE PDYL  I   + MDL TM SKLES +Y   +   QFVED   I+ NC+ +
Sbjct:  725 MERTLHSLKEHSLSWPFREPVNLEEVPDYLDVI--KTPMDLMTMESKLESNQY---KNIEQFVEDALLIFDNCKLY 795
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BLAST of mRNA_H-elongata_contig18919.5194.1 vs. uniprot
Match: A0A4Y7T880_9AGAR (Histone acetyltransferase GCN5 n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7T880_9AGAR)

HSP 1 Score: 58.5 bits (140), Expect = 3.380e-5
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0 
Query:  682 MKHLLQELMRHDLSRCFREPVDVEEHPDYLKAIGRNSMMDLHTMMSKLESRKYPRRRGPGQFVEDLCKIWRNCRKF 757
            M+  L  L  H  S  FREPV+++E PDYL+ I   S MDL TM +KLES +Y   +   QFV+D   I+ NCR +
Sbjct:  276 MERTLSNLKGHGSSWPFREPVNLDEVPDYLEFI--KSPMDLTTMEAKLESNQY---KNLEQFVDDALLIFDNCRLY 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18919.5194.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL59_ECTSI1.230e-7856.54Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8H5BMH4_9AGAR2.400e-648.68Histone acetyltransferase GCN5 n=1 Tax=Tulosesus a... [more]
A0A4Y7T880_9AGAR3.380e-546.05Histone acetyltransferase GCN5 n=1 Tax=Coprinellus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 113..147
IPR001487BromodomainSMARTSM00297bromo_6coord: 671..795
e-value: 2.0E-8
score: 44.0
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 682..759
e-value: 1.2E-14
score: 54.1
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 690..765
score: 9.904
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 678..801
e-value: 9.9E-20
score: 72.5
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 682..798
IPR037800Histone acetyltransferase GCN5PANTHERPTHR45750FAMILY NOT NAMEDcoord: 674..758

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18919contigH-elongata_contig18919:1635..4949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18919.5194.1mRNA_H-elongata_contig18919.5194.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18919 1609..6461 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18919.5194.1 ID=prot_H-elongata_contig18919.5194.1|Name=mRNA_H-elongata_contig18919.5194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=959bp
MPEEEGALLGASFILPGKFLRSTSGLDSSRRTFADVSVNDMRSHAGGSTT
ITLRQQQKLDMNHNDCTNAGRAPVSYTIGADSGRQHEYTNHINALQELCV
RVGNDNTRLQLEAAQLELVNNNQYRQVSQLKQRVRELEAELTRFRTVGLT
TGHHQSSGSFILPPKSRIVDSDASFAQGRAPASNFHSTMGFQRHIPTACE
WTAPTLRGAGAPRRTDSIASHCLEEANLLAHATRKNYASSNTGENIKIGT
MAGPDRHGCSTTTLGRSEHLAQPRDAASAFLTVGKGNTSPDFVAQGDLDT
TASSPAVRPTVDFDDVRLDGAQENAAMLMSLCKQQGQGMHRSSARAAVPE
AEQLTSDHKGRAEIKGRKGVTTPHLLTADCSSVTALSDAPSLAMKTIVAG
TLENAATSDAAIPSLRDFWIGDTSRVVVSVTPDAKDCTEDANKSIADGAD
VQDEFAEEDRSERLGQSDSPRRTSVKRLEHPDKPDRDTSPGLGEQDTTLR
PGTAPQDPVIAPGSANDLQSGNGTRLPQRTPPICCQAVETISGKGQASAS
DTIPTPKESDDGTTTVKHRQQPTLAVRPAGAEASNAINAIGASTHVTVCS
YCNTPPLKDNPVAFCEECPRRLCVKCLRNNIQGTELNCGGLDPRTLNLLE
GRGGDIFVEECPWCLRQSDLEFTPPSLGESPMKHLLQELMRHDLSRCFRE
PVDVEEHPDYLKAIGRNSMMDLHTMMSKLESRKYPRRRGPGQFVEDLCKI
WRNCRKFAGCDELGQSLHGTSVPGIVRCALILEAISNKYVQSYISDKCDT
EWPESAWDYYRQRRKREHEEARLKQVECKANGGRRGITTGREGNVKYDST
QVLRGSSNIREATRSDLQLVSSSEPYKKQKVRLEKCDGSIEGQEDGSHGP
RPSLTSLGSKGKSSHVTWKPLEELCDVAKSFSRRNSGVDVPNLNKEQIKA
GDKEFIEI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR037800GCN5