prot_H-elongata_contig18863.5171.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18863.5171.1
Unique Nameprot_H-elongata_contig18863.5171.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
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BLAST of mRNA_H-elongata_contig18863.5171.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-10
Identity = 56/127 (44.09%), Postives = 67/127 (52.76%), Query Frame = 0 
Query:    1 ELVASDGRDLGHQLFDGEGDDMGMGAGSRQQGARRRPXXSR--DXXXXXXXXXXXXXXLGGDRRQSGGARGQSFQVGTSGASQDQLDEALEIFGDGIQDFNFLKKDEDEDMELGPDGKPLRLSRDAR 125
            ELVASDG+DL +QLFDGE +                 XX    D              LG +RRQ    + +SFQ G  GASQDQ+ EA+EIFG+GIQDF+  K   D D E   DGK  R S+DAR
Sbjct:  190 ELVASDGQDLRNQLFDGEEEXXXXXXXXXXXXXXXXXXXXXXXDEFDSEDDGDFIVDDLGTERRQGRRQQQESFQGGPLGASQDQVYEAMEIFGEGIQDFDLFK---DVDGEDEADGKQ-RASKDAR 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18863.5171.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQN4_ECTSI1.190e-1044.09GTB1 RNA binding / hydrolase, acting on ester bond... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18863contigH-elongata_contig18863:2210..5120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18863.5171.1mRNA_H-elongata_contig18863.5171.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18863 2210..5120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18863.5171.1 ID=prot_H-elongata_contig18863.5171.1|Name=mRNA_H-elongata_contig18863.5171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
ELVASDGRDLGHQLFDGEGDDMGMGAGSRQQGARRRPPQSRDEFDSEEDD
DFIVDDLGGDRRQSGGARGQSFQVGTSGASQDQLDEALEIFGDGIQDFNF
LKKDEDEDMELGPDGKPLRLSRDARSK
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