prot_H-elongata_contig18863.5170.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18863.5170.1
Unique Nameprot_H-elongata_contig18863.5170.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
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BLAST of mRNA_H-elongata_contig18863.5170.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 7.700e-29
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 0 
Query:    1 ELEDEAQWICHQLDLGYSAQEEKAKKAVEHVLRFLGVERQEVPFIWYFRRDYLRTGP--SSHLTRNHLWKIFQFDETWAKV 79
            E +DEAQWI HQLDLG+   E+ AK A+EHVLRFLGVE QEVPF+W++RRDYL T P  +++LT +HLWKI+  DETW KV
Sbjct:  359 ERQDEAQWIFHQLDLGFGVDEQMAKSAIEHVLRFLGVESQEVPFVWHYRRDYLWTSPQMNTYLTLDHLWKIYDLDETWDKV 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18863.5170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQN4_ECTSI7.700e-2965.43GTB1 RNA binding / hydrolase, acting on ester bond... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028088Helix-turn-helix DNA-binding domain of Spt6PFAMPF14641HTH_44coord: 1..79
e-value: 2.0E-16
score: 60.5
IPR023319Tex-like protein, HTH domain superfamilyGENE3D1.10.10.650coord: 1..81
e-value: 5.6E-17
score: 64.2
IPR017072Transcription elongation factor Spt6PANTHERPTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6coord: 1..79
NoneNo IPR availableSUPERFAMILY158832Tex N-terminal region-likecoord: 23..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18863contigH-elongata_contig18863:277..1040 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18863.5170.1mRNA_H-elongata_contig18863.5170.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18863 277..1040 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18863.5170.1 ID=prot_H-elongata_contig18863.5170.1|Name=mRNA_H-elongata_contig18863.5170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
ELEDEAQWICHQLDLGYSAQEEKAKKAVEHVLRFLGVERQEVPFIWYFRR
DYLRTGPSSHLTRNHLWKIFQFDETWAKVRQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028088Spt6_HTH_DNA-bd_dom
IPR023319Tex-like_HTH_dom_sf
IPR017072TF_Spt6