prot_H-elongata_contig188018.5142.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig188018.5142.1
Unique Nameprot_H-elongata_contig188018.5142.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.170e-28
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 0
Query:    3 ITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +  +VGSFVPCE+AEMSVRDAVFARVGAGD+QQRG+STFMAEMLEASAIISAA+KDSLIIIDELGRG
Sbjct:  591 VMAQVGSFVPCETAEMSVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASKDSLIIIDELGRG 657          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S2V0D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.450e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    2 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +I  +VGSFVPC SAE+SV D V ARVGAGD QQRG+STFMAEMLEASAI+  AT DSL+IIDELGRG
Sbjct:   94 VIMAQVGSFVPCSSAELSVMDCVLARVGAGDRQQRGLSTFMAEMLEASAILQTATSDSLVIIDELGRG 161          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S0SP60_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SP60_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 6.730e-24
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 0
Query:    2 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            ++  +VGSFVPC+ A++++RDA+FARVGAGD Q RGISTFMAEMLE +AI+ AAT  SLIIIDELGRG
Sbjct:   70 VLLAQVGSFVPCDRAKITIRDAIFARVGAGDCQLRGISTFMAEMLETAAILKAATPSSLIIIDELGRG 137          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S0RPG5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RPG5_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 7.260e-24
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 0
Query:    2 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            ++  +VG FVPC+SA +SVRDA+FARVGAGD Q RG+STFMAEMLE ++I+  AT  SL+IIDELGRG
Sbjct:   11 VLMAQVGCFVPCDSASISVRDAIFARVGAGDCQLRGVSTFMAEMLETASILKGATAASLVIIDELGRG 78          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A1Y1ILK0_KLENI (Putative MutS homolog 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILK0_KLENI)

HSP 1 Score: 101 bits (252), Expect = 1.600e-23
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 0
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +++  +VG FVPC+SA++SVRD +FARVGAGD Q RG+STFMAEMLE SAI+ AAT++SLIIIDELGRG
Sbjct:  695 NVLMAQVGCFVPCDSADISVRDCIFARVGAGDCQLRGVSTFMAEMLETSAILKAATQNSLIIIDELGRG 763          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: E1ZJU0_CHLVA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJU0_CHLVA)

HSP 1 Score: 99.0 bits (245), Expect = 3.900e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 0
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +++  ++GSFVP +SA +SVRDA+FARVGAGD QQRG+STFMAEMLE +AI+  AT  SL+IIDELGRG
Sbjct:  137 AVLMAQIGSFVPADSARISVRDAIFARVGAGDCQQRGLSTFMAEMLETAAILKGATSSSLVIIDELGRG 205          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7J8E3D0_MOLMO (DNA mismatch repair protein Msh2 n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8E3D0_MOLMO)

HSP 1 Score: 97.8 bits (242), Expect = 4.050e-23
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 0
Query:    2 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            ++  ++G FVPCESAE+S+ D + ARVGAGDSQ +G+STFMAEMLE ++I+ +ATKDSLIIIDELGRG
Sbjct:   42 VLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 109          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A2R5LBE2_9ACAR (Putative mismatch repair msh3 (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LBE2_9ACAR)

HSP 1 Score: 95.5 bits (236), Expect = 4.190e-23
Identity = 43/69 (62.32%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +++  ++GSFVPC++AE+SV DAV  R+GAGD Q +G+STFMAEMLE++AI+  AT+DSL++IDELGRG
Sbjct:   14 AVLMAQIGSFVPCDAAEISVVDAVLTRIGAGDQQLKGVSTFMAEMLESAAILRTATEDSLVVIDELGRG 82          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S3CEN8_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CEN8_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 5.450e-23
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +++  + G FVPC+ A +SVRDAV+ARVGAGD QQRG+STFMAEMLE ++I+  ATK SL++IDELGRG
Sbjct:   87 AVLLAQCGCFVPCDEATISVRDAVYARVGAGDCQQRGVSTFMAEMLETASILKGATKSSLVVIDELGRG 155          
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: T1IP55_STRMM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IP55_STRMM)

HSP 1 Score: 100 bits (248), Expect = 5.540e-23
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 69
            +++  ++GSF+PCESAE+S+ D++ ARVGAGDSQ +G+STFM EMLE +AI+ AAT DSLIIIDELGRG
Sbjct:  679 NVVLAQIGSFIPCESAEISIVDSILARVGAGDSQMKGVSTFMVEMLETAAILRAATSDSLIIIDELGRG 747          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE1.170e-2888.06DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S2V0D9_9STRA1.450e-2576.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0SP60_9CHLO6.730e-2470.59Hypothetical protein (Fragment) n=2 Tax=Mantoniell... [more]
A0A7S0RPG5_9CHLO7.260e-2467.65Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1Y1ILK0_KLENI1.600e-2371.01Putative MutS homolog 2 n=1 Tax=Klebsormidium nite... [more]
E1ZJU0_CHLVA3.900e-2368.12DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7J8E3D0_MOLMO4.050e-2367.65DNA mismatch repair protein Msh2 n=1 Tax=Molossus ... [more]
A0A2R5LBE2_9ACAR4.190e-2362.32Putative mismatch repair msh3 (Fragment) n=1 Tax=O... [more]
A0A7S3CEN8_9CHLO5.450e-2365.22Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
T1IP55_STRMM5.540e-2366.67DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 6..69
e-value: 2.7E-4
score: -61.6
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 3..69
e-value: 4.8E-26
score: 91.9
NoneNo IPR availableGENE3D3.40.50.300coord: 1..69
e-value: 2.2E-27
score: 97.9
NoneNo IPR availablePANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 2..69
IPR032642DNA mismatch repair protein Msh2PANTHERPTHR11361:SF35DNA MISMATCH REPAIR PROTEIN MSH2coord: 2..69
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188018contigH-elongata_contig188018:401..607 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188018.5142.1mRNA_H-elongata_contig188018.5142.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig188018 401..607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig188018.5142.1 ID=prot_H-elongata_contig188018.5142.1|Name=mRNA_H-elongata_contig188018.5142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASA
IISAATKDSLIIIDELGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000432DNA_mismatch_repair_MutS_C
IPR032642Msh2
IPR027417P-loop_NTPase