prot_H-elongata_contig187864.5132.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187864.5132.1
Unique Nameprot_H-elongata_contig187864.5132.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length185
Homology
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.610e-34
Identity = 76/197 (38.58%), Postives = 118/197 (59.90%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLYFSADGFGAKE-------LAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVAIG 185
            I+TAG+ +L+G   GVL   VT D G    +   +V+VPG+G NLFS   A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  +   A+  G +        LA+ V T A +WHRR+GH++ +SLD+LR++ ++GI++ G V DC  C +G++ Q  H K A +  + PFQL + D +GPFTP A+G
Sbjct:  455 IITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALG 650          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.110e-34
Identity = 75/197 (38.07%), Postives = 118/197 (59.90%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLYFSADGFGAKE-------LAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVAIG 185
            I+TAG+ +L+G   GVL   VT D G    +   +++VPG+G NLFS   A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  +   A+  G +        LA+ V T A +WHRR+GH++ +SLD+LR++ ++GI++ G V DC  C +G++ Q  H K A +  + PFQL + D +GPFTP A+G
Sbjct:  455 IITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALG 650          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.220e-32
Identity = 74/197 (37.56%), Postives = 115/197 (58.38%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLYFSADGFGAKE-------LAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVAIG 185
            I+TAG+ +L+G   GVL   VT D G    +   +V+VPG+G NLFS   A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  +   A+  G +        LA+ V T A +WHRR+GH++ +SLD+LR++ ++GI++ G V DC  C +G++ Q  H K A +  + PFQL + D  GPFT   +G
Sbjct:  360 IITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLG 555          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.230e-28
Identity = 68/197 (34.52%), Postives = 106/197 (53.81%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLYFSADGFG------AKELAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVAIG 185
            I+ AG+ +L G   G +   VT D G+   +   +++VPG+G NLFS   A  KG+  +F  +NPRLE  +V  P+++          +YS  +    +  G      A +     V +A +WHRR+GH++ ++LD+LRK    G+++ G V  C VC +G++ Q  H K A +   RPFQ    D + PFTP A+G
Sbjct:  381 IVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALG 574          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.980e-28
Identity = 66/197 (33.50%), Postives = 104/197 (52.79%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLYFSADGFG------AKELAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVAIG 185
            I+ AG+ +L G   G +   VT D G+   +   +++VPG+G NLFS   A  KG+  +F  +NPRLE  +V  P+++          +YS  +    +  G      A +     V +A +WHRR+G ++ +SLD+LRK+    +++ G V DC VC +G++ Q  H K A +   RPFQ      + PFTP  +G
Sbjct:  634 IVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLG 830          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.400e-24
Identity = 66/198 (33.33%), Postives = 96/198 (48.48%), Query Frame = 0
Query:    4 AGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPL----RSESGNLYSFVLYFSADGFGAKELAMN--------------VVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVA 183
            AG   L GTA G+L   V  + G Q+ +RI   +VPG+GRN+FS  +  KKG+  + +   P L      +PL    R +           +    G K L  +               + +A  WHRRLGHL+A+SLDILRK   TG+++  ++  C VC + + +Q  H K +  + +RP QL     MGP  P A
Sbjct:  209 AGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPA 406          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.650e-24
Identity = 65/198 (32.83%), Postives = 98/198 (49.49%), Query Frame = 0
Query:    4 AGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPL----RSESGNLYSFVLYFSADGFGAKELAMN--------------VVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVA 183
            AG + L GTA G+L   V  + G Q+ +RI  ++VPG+GRN+FS  +  KKG+  + +   P L      +PL    R +           +    G K L  +               + +A  WHRRLGHL+A+SLDIL K   T +++  ++  C VC + + +Q  + K +  + +RP QL   D MGP TP A
Sbjct:   27 AGGSQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPA 224          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.040e-23
Identity = 65/198 (32.83%), Postives = 97/198 (48.99%), Query Frame = 0
Query:    4 AGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPL----RSESGNLYSFVLYFSADGFGAKELAMN--------------VVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGEAQQLAHLKTANHKANRPFQLCYGDLMGPFTPVA 183
            AG   L GTA G+L   V  + G Q+ +RI  ++VPG+GRN+FS  +  K+G+  + +   P L      +PL    R +           +    G K L  +               + +A  WHRRLGHL+A+SLDILRK   T +++  ++  C VC + + +Q  H K +  + +RP QL   D MGP  P A
Sbjct:  244 AGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPA 441          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.860e-23
Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLYFSADGFGAKE-------LAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAV-----GEAQQLAH 156
            I+TAG+ +L+G   GVL   VT D G    +   +V+VPG+G NLFS   A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  +   A+  G +        LA+ V T A +WHRR+GH++ +SLD+LR++ ++GI++ G V DC  C +     GE+Q+  H
Sbjct:  455 IITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLDETGAGESQRYLH 626          
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.820e-23
Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 0
Query:    1 ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGITAAKKGIVAIFDFENPRLEGFNVTVPLRSESGN-----LYSFVLYFSADGFGAKE-------LAMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVC 146
            I+TAG+ +L+G   GVL   VT D G    +   +V+VPG+G NLFS   A   G+ ++F   NPRLE  N  VP++ +  N       S  +   A+  G +        LA+ V T A +WHRR+GH++ +SLD+LR++ ++GI++ G V DC  C
Sbjct:  455 IITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPGNPRLESANAVVPMKIQGVNNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGHVQDCSAC 611          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187864.5132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.610e-3438.58Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE3.110e-3438.07Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.220e-3237.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Q7_9PHAE1.230e-2834.52gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5JVF6_9PHAE7.980e-2833.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG5_9PHAE4.400e-2433.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M6_9PHAE4.650e-2432.83gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KVF6_9PHAE1.040e-2332.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KYQ2_9PHAE2.860e-2336.42CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJH6_9PHAE7.820e-2337.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 103..149
e-value: 1.2E-6
score: 28.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187864contigH-elongata_contig187864:611..1165 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187864.5132.1mRNA_H-elongata_contig187864.5132.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187864 611..1165 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187864.5132.1 ID=prot_H-elongata_contig187864.5132.1|Name=mRNA_H-elongata_contig187864.5132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
ILTAGRALLNGTAEGVLQRLVTKDYGDQIIIRIDIVVVPGIGRNLFSGIT
AAKKGIVAIFDFENPRLEGFNVTVPLRSESGNLYSFVLYFSADGFGAKEL
AMNVVTNAQVWHRRLGHLHAQSLDILRKRYSTGINFEGAVLDCDVCAVGE
AQQLAHLKTANHKANRPFQLCYGDLMGPFTPVAIG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom