prot_H-elongata_contig1877.5124.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1877.5124.1
Unique Nameprot_H-elongata_contig1877.5124.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1308
Homology
BLAST of mRNA_H-elongata_contig1877.5124.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 891 bits (2303), Expect = 2.060e-279
Identity = 652/1552 (42.01%), Postives = 820/1552 (52.84%), Query Frame = 0
Query:    1 MLRVGERVLLLALRDDPNKNPLGYLSSRLLTDVEGKSSLVTLDCTLSPFRDVPPGEKSFEPVAVSNCIFRVEACMDRHDASRANATQRRVDAGIATHTGIQPGIPVRYSKAIQLMHEVSGALLCIDVRERAANEGFAMKVVLKTVETSSDDMVVSDDWLDTWWELRSPENVRISQLLHFDEICLHSNRWHRSLRAQPTAAARKKIGEGCVDRGTGSPP----MLGINSVVSQDDCPGEVDASFTASLLRVVPFDDYPSPPASDDIQALEFSTTMLSSA-TSFSSSLRSPMSSVGDSGRFPAAFPG-GTTD----GEMVKRG-LRGGDTVRLCHLTSSGFLTHETVPTTP------------PKSYGMTGGNGATEGD-----IAASIKKRYHDDGGHFGAFLYVSTTPQRLQKLQNASSNCLWVLERTHCALGGRPLRRTAERKA----------------------------------------------------------PARGALSAGTAGFRSGAEAEYGRRHSDTCDGA---------------LAFSVDGPPSST---SIGLNMSADTVANLTRRQGAGDAVEYVRIKHLATMRYLCVGKKCDPVPVEGGEEDLDGRNENSAQGKGGKRGR-------------GKGKRFVFPRVGMVTVERRAALPAATVFAIRPRSTG--------GVVAASTGGI---LGSTDLVHLQHRETGFFLAAMPREIEAGDERVELTVVKSPLTSEYWRITRASEREKNATNHILRALAQLKAALKPLLDEVDRLPLY--IGER------------SISHCPPPVPSARVLRPATIAVAHFHSVIARGVGWWL------KREPKG--ADRAMSGATRASVQEGPRIAGQKLKGLGERTGRGAA----VWALARSTSSDMAEDSGLIRKKDRARGS-LNSGKYSGVWSVVSAGVTGGS---------SADSTSLDEFYGNPKLGFQLLLREQGVIVALFNAMEKIFRARDNLLMNTLWWEDT--EIVSVSTQ---------------HTSLGDTSEAEGAANGENGV--ENAEARLILRRLVREAMALADFFAKDHVRGKMVLEPFTLLLREMIGSGLGACELLATIRRDNPRTHLNVTAKRIQEIVGSLPESRDLANSMRLMASICRIGHALLPTVQRLVAVTALVG-------------------------------------------DNASASFDHAGSIFGSAD------------------VNTTSTTTISVSGSSIAHGGDGIVNGDSDGSEEVQKDEMDDEVLDREREARMRAGTGAGVGERRSVTFNNPRGLFRYELISNAEPSGRRVGSRRRGKGHSFSYERNQAPWWSADGTRGIRVKLEGLVKNPLPTRGQLPRLKELL-AQRRMSSNEVVVFEAWLEGGGS-SRTVVRVVSRGGLEEFS-----GGRG---GAGASSSAGDLLEYFVESVKLMSTLCRERHAENIVLLRAMKGTTYKELMEVVRCETVPISVRGAFALLVERMHLDVAPLLPQPAIRYDR-KDE 1297
            MLRVGERVLLLAL ++ +K+PLGYLSSRLL D EG+SS  TLDC+L+ FRD PP E+S+EPV VS+C+FRV AC+DRHDA+RA+ +QR ++ G   H G+QPG PVRYSKA+QL+HE SGALLCIDV+ERA +EGFAMKVVLK ++  S D   +D + +TWWE++SP NVRISQ+LH+DEICLHSNRW RS+RA PT   R+++       G           G++  + ++  PG V ASF+ SLLRVVP+DD PS P SD+   L  +TT  ++   S S     P     DS   P A  G GT D    G     G +RGGD VRLCHL S+GFLT E V  TP            P+  G  G             +   ++ +  D G   G FLY+S TP R  KLQNASSNCLWVLERTHCALGGRPLR +    A                                                                           E +     SD   G                   S   P SS      G +  A+ VA   RRQGAGD VEYVRIKHLATMRYLCVGKKCDPV   GG          +A G  G  G                       RVGM+TV++ AA+PAATVF IRPR T         G  AA   G    LG  DLVHLQH+ TG FL+A+P E  A    + LT+VKSPLT+EYWR+ RA ERE+ ATNHIL A AQLKA+L  LL E++++P +   G++            S ++  PPVP AR +RPA +AV+HFHSV++RG  W        K+ P    + R  S A  +   + P   G+ L  +GER G+ ++    +                + RK++R+R + L            ++GV+            S+   SLDEF+ NP+L FQLLLREQG++V LF +M  IFR +D +L   LWW+D   E  S ST                 T +G T    G+   E  +  + + AR  LR+ V +AMALADFFA+D+ RGK VLE FT LLR +IGSGLGACE+LATIRRDNPRT+  VT  RIQ+I+ +LPESRDLANSMRL+ SIC++GH+LLP++QRLVAVT LVG                                           D      +H  S+  S +                  +     TT  V  S  A        G+  G                       AG GA V         +  G  +   IS++  S RR  S R   G +F          SADGT+GIRV+L+ LV   +    QL R +ELL  + R+SS E V+FEA  EG GS SRTVVRV+SRGG  E       G RG   GAG SS+AGDLLE FVESV+L+++LC+ERH  NI L+R++KGTTYKELMEVVR ETVP +VR AFA L+E  HL+VAPLLP+P +RY R KD+
Sbjct:    1 MLRVGERVLLLALSEERDKHPLGYLSSRLLMDAEGRSSFATLDCSLTSFRDAPPAERSWEPVVVSDCVFRVAACVDRHDATRASQSQRNLEPGNTVHRGMQPGTPVRYSKAVQLVHEFSGALLCIDVQERAESEGFAMKVVLKAIDPPSGDGGSTDGYKNTWWEVKSPGNVRISQVLHYDEICLHSNRWDRSVRAHPTLLDRQRVTSATEVEGESGTEEAGAATGLSPTLPREKYPGAVHASFSHSLLRVVPYDDCPSLPYSDE--GLSIATTSAATVMASASGGWPGP-----DSSSSPHALAGSGTADTPVGGVADDAGAIRGGDVVRLCHLRSTGFLTCEVV--TPEAFPRGGWAQPEPRMVGQAGXXXXXXXXXXXXXVDGPVQGQASDGGVGGGPFLYISATPHRRLKLQNASSNCLWVLERTHCALGGRPLRGSCASAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATERQRWNSDSDYFPGGNXXXXXXXXXXXXXXXXXSGTRPSSSFPGGGFGRDTYAEAVAKRRRRQGAGDPVEYVRIKHLATMRYLCVGKKCDPVRGGGGV---------NAGGDAGASGTPATXXXXXXXXXXXAAADAAATRVGMLTVDQHAAVPAATVFVIRPRRTAAAGAEGLVGPAAAEGAGADRWLGPEDLVHLQHKNTGLFLSALPLENTAKGG-IGLTMVKSPLTTEYWRLARAPERERMATNHILTAQAQLKASLDSLLVEIEKMPPFDAAGKKNNTDGRAPAAPPSAAYLYPPVPYARFIRPAALAVSHFHSVLSRGAAWXXXXXXGTKKFPPSVSSSRGHSLAGHSGGGDAPSAGGRGLMSMGERLGKASSSSRRISVXXXXXXXXXXXRVIIGRKRERSRHNVLGXXXXXXXXXXXASGVSXXXXXXXXXXXXSSLMISLDEFHANPRLRFQLLLREQGIVVQLFESMWTIFREQDGILARHLWWDDDAEESASGSTTVSIGPPAFSATPRSGATRVGGTDVGGGSNTDEWEIRRDRSAARHCLRQFVVQAMALADFFARDNPRGKAVLENFTPLLRMLIGSGLGACEVLATIRRDNPRTYAVVTPARIQQILATLPESRDLANSMRLLRSICKVGHSLLPSIQRLVAVTVLVGVDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDEXXXGGEHGVSVAASLEGEENHLLRNPRSLFRYELIRDMDVTTSDVDASGAAXXXTSTDRGNGSGG--------------------TLAG-GASVSRPSLTPSASESGRGKASSISSSVKSQRRRPSLRAASGTNFR---------SADGTKGIRVRLKRLVAG-VSMGEQLRRRRELLNGETRVSSGEGVIFEAVQEGSGSASRTVVRVLSRGGAGEPPVEGPWGPRGSGRGAGPSSAAGDLLELFVESVRLLASLCQERHKGNIALVRSLKGTTYKELMEVVRSETVPPTVRAAFAQLLEHCHLNVAPLLPRPPVRYVRLKDD 1502          
BLAST of mRNA_H-elongata_contig1877.5124.1 vs. uniprot
Match: A0A6H5KQK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK2_9PHAE)

HSP 1 Score: 363 bits (932), Expect = 9.110e-100
Identity = 295/732 (40.30%), Postives = 380/732 (51.91%), Query Frame = 0
Query:  677 PPVPSARVLRPATIAVAHFHSVIARGVGWWLKREPKGAD-----------RAMSGATRASVQEGPRIAGQKLKGLGERTGRGAAVWALARSTSSDMAEDSG----LIRKKDRAR----GSLNSGKYSGVWSVVSAGVTGGS-SADSTSLDEFYGNPKLGFQLLLREQGVIVALFNAMEKIFRARDNLLMNTLWWEDT--EIVSVSTQ--------------HTSLGDTSEAEGAANGENGV--ENAEARLILRRLVREAMALADFFAKDHVRGKMVLEPFTLLLREMIGSGLGACELLATIRRDNPRTHLNVTAKRIQEIVGSLPESRDLANSMRLMASICRIGHALLPTVQRLVAVTALVGDNASASFDHAGSIFGSADVNTTSTTTISVSGSSIAHGGDGIV------NGDSDGSEEVQKDEMDDEVLDREREARMRAGTGAGVGERRSVTFNNPRGLFRYELISNAE--PS-------------------------GRRVGSR----------RRGKGHSFSYE---RNQAP---------WWSADGTRGIRVKLEGLVKNPLPTRGQLPRLKELL-AQRRMSSNEVVVFEAWLEGGGS-SRTVVRVVSRGGLEEFS-----GGRG---GAGASSSAGDLLEYFVESVKLMSTLCRERHAENIVLLRAMKGTTYKELMEVVRCETVPISVRGAFALLVERMHLDVAPLLPQPAIRYDR-KDEQFDVRCN 1304
            PPVP AR +RPA +AV+HFHSV++RG  W                     R+++G +     + P   G+ L  +GE  G+ +                      + RK++R+R    G L  G  SGV             S+   SLDEF+ NP+L FQLLLREQG++V LF AM     + D +L   LWW+    E  S ST                T +G T    G+   E  +  + ++AR  LR+ V +AMALADFFA+D+ RGK VLE FT LLR +IGSGLGACE+LATIRRDNPRT+  VT  RIQ+I+ +LPESRDLANSMRL+ SIC++GH+LLP++QRLVAVT LVG + +                                            +G S                D   EA  R G+ +  G    +   NPR LFRYELI + +  PS                         G    SR           RGK  S S     + + P         + SADGT GIRV+L+ LV   +    QL R +E+L  + R+SS E V+FEA  EG GS SRTVVRV+SRGG  E       G RG   GAG SS+AGDLLE FVESV+L+++LC+ERH  NI L+R++KGTTYKELMEVVR ETVP +VR AFA L+E  HL+VAPLLP+P +RY R KD+  +  C+
Sbjct:   28 PPVPYARFIRPAALAVSHFHSVLSRGAAWXXXXXXXXXXXXXXXXXXXXXRSLAGHSGGG--DAPSAGGRGLMSMGESLGKSSXXXXXXXXXXXXXXXXXAARVIVGRKRERSRHNVVGGLRGGGASGVXXXXXXXXXXXXXSSLMISLDEFHANPRLRFQLLLREQGIVVQLFEAM-----STDGILARHLWWDGDAKESASGSTSIAPPAFKSTTPRSGATRVGGTDVGGGSNTDEWEMRRDRSDARHCLRQFVVQAMALADFFARDNPRGKAVLENFTPLLRMLIGSGLGACEVLATIRRDNPRTYAVVTPARIQQILATLPESRDLANSMRLLRSICKVGHSLLPSIQRLVAVTVLVGVDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGVSAAXXXXXXXXXXXXXXD---EASRRVGSDSREGVENHL-LRNPRSLFRYELIRDMDVTPSDVDAXXXXXXXXXXXXXXXXXGTLAGGASASRPSLTPSASESSRGKAXSNSSRVKSQRRKPSLPGASGTNFRSADGTNGIRVRLKRLVAG-VSMGEQLRRRREMLNGETRVSSGEGVIFEAVQEGSGSASRTVVRVLSRGGAGEPPVEGPWGARGSGRGAGPSSAAGDLLELFVESVRLLASLCQERHEGNIALVRSLKGTTYKELMEVVRSETVPPTVRAAFAQLLEHCHLNVAPLLPRPPVRYVRLKDDDDEXTCD 747          
BLAST of mRNA_H-elongata_contig1877.5124.1 vs. uniprot
Match: A0A6H5KRP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP3_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 2.770e-96
Identity = 269/673 (39.97%), Postives = 327/673 (48.59%), Query Frame = 0
Query:  103 GIPVRYSKAIQLMHEVSGALLCIDVRERAANEGFAMKVVLKTVETSSDDMVVSDDWLDTWWELRSPENVRISQ---------------LLHFDEICLHSNRWHRSLRAQPTAAARKKIGEGCVDRGTGSPPMLGINS----VVSQDDCPGEVDASFTASLLRVVPFDDYPSPPASDDIQALEFSTTMLSSA-TSFSSSLRSPMSSVGDSGRFPAAFPG-GTTD----GEMVKRG-LRGGDTVRLCHLTSSGFLTHETVPTTPPKSYGMTGGNGATE-------------------GDIAASIKKRYHDDGGHFGAFLYVSTTPQRLQKLQNASSNCLWVLERTHCALGGRPLRRTAERKAPARGAL-----------------SAGTAG-------------------------------------------FRSGAEAEYGRRHSDTCD------------------------GALAFSVDGPPSST----SIGLNMSADTVANLTRRQGAGDAVEYVRIKHLATMRYLCVGKKCDPVPVEGGEEDLDGRNENSAQGKGGKRGRGKGKRFVFP----RVGMVTVERRAALPAATVFAIRPRSTGGVVAASTGGI--------------LGSTDLVHLQHRETGFFLAAMPREIEAGDERVELTVVKSPLTSE 624
            G PVRYSKA+QL+HE SGALLCIDV++RA  EGFAMKVVLK ++  S D   +D + DTWWE++SP NVRISQ               +LH+DEICLHSNRW RSLRA PT   R+++       G       G ++     + ++  PG V ASF+ SLLRVVP+DD PS P  D    L  +TT  ++   S S    +P     DS   P A  G GT D    G +   G +RGGD VRLCHL S+GFLT E V    P+++   GG    E                     +    + +  D G   G FLY+S TP R QKLQNASSNCLWVLERTHCALGGRPLR +    A A GA+                 S  T+G                                            RSGA  E  R +SD+ +                        G+   +    PSS+      G +  A+ VA   RRQGAGD VEYVRIKHLATMRYLCVGKKCDPV   GG                                  RVGM+TV++ AA+PAATVF IRPR T    AA  GG+              LG  DLVHLQH+ TG FL+A+  E  A   R+ LT+VKSPLT+E
Sbjct:   11 GTPVRYSKAVQLVHEFSGALLCIDVQKRAEREGFAMKVVLKAIDPPSGDGGSTDGYKDTWWEVKSPGNVRISQARLASCFASSSGEGKVLHYDEICLHSNRWDRSLRAHPTLLDRQRVTTATEVEGVSGAEEPGASTGPSPTLPREKYPGAVHASFSHSLLRVVPYDDCPSLPYDDG--RLSIATTAAAAXMASASGGWPAP-----DSSSSPYALAGSGTADTPVGGVVDDAGAIRGGDVVRLCHLASTGFLTCEAVT---PEAF-PRGGWAQPETRMVDQAGXXXXXXXXXXXAGVDGPAQGQASDGGVGGGPFLYISATPHRRQKLQNASSNCLWVLERTHCALGGRPLRGSC---ASAAGAVDPPQQRQQQGENPTAWSSFSTSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGAT-ERQRWNSDSDNFPGGNDXXXXXXXXXXXXXXXXXVGSTGVASGTRPSSSFPGGGFGRDTYAEAVAKRRRRQGAGDPVEYVRIKHLATMRYLCVGKKCDPVRGGGGVNSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAARVGMLTVDQHAAVPAATVFVIRPRRTA---AAGAGGLVGPAATEEVGADRWLGPEDLVHLQHKNTGLFLSALRLENTAKG-RIGLTMVKSPLTTE 664          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1877.5124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMW8_ECTSI2.060e-27942.01Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
A0A6H5KQK2_9PHAE9.110e-10040.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRP3_9PHAE2.770e-9639.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014821Inositol 1,4,5-trisphosphate/ryanodine receptorPFAMPF08709Ins145_P3_reccoord: 56..144
e-value: 8.3E-6
score: 25.1
NoneNo IPR availableGENE3D2.80.10.50coord: 1..250
e-value: 4.6E-8
score: 34.5
IPR016093MIR motifPROSITEPS50919MIRcoord: 578..631
score: 8.676
IPR016093MIR motifPROSITEPS50919MIRcoord: 309..400
score: 5.274
IPR016093MIR motifPROSITEPS50919MIRcoord: 103..168
score: 5.201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1877contigH-elongata_contig1877:3136..14721 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1877.5124.1mRNA_H-elongata_contig1877.5124.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1877 3136..14721 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1877.5124.1 ID=prot_H-elongata_contig1877.5124.1|Name=mRNA_H-elongata_contig1877.5124.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1308bp
MLRVGERVLLLALRDDPNKNPLGYLSSRLLTDVEGKSSLVTLDCTLSPFR
DVPPGEKSFEPVAVSNCIFRVEACMDRHDASRANATQRRVDAGIATHTGI
QPGIPVRYSKAIQLMHEVSGALLCIDVRERAANEGFAMKVVLKTVETSSD
DMVVSDDWLDTWWELRSPENVRISQLLHFDEICLHSNRWHRSLRAQPTAA
ARKKIGEGCVDRGTGSPPMLGINSVVSQDDCPGEVDASFTASLLRVVPFD
DYPSPPASDDIQALEFSTTMLSSATSFSSSLRSPMSSVGDSGRFPAAFPG
GTTDGEMVKRGLRGGDTVRLCHLTSSGFLTHETVPTTPPKSYGMTGGNGA
TEGDIAASIKKRYHDDGGHFGAFLYVSTTPQRLQKLQNASSNCLWVLERT
HCALGGRPLRRTAERKAPARGALSAGTAGFRSGAEAEYGRRHSDTCDGAL
AFSVDGPPSSTSIGLNMSADTVANLTRRQGAGDAVEYVRIKHLATMRYLC
VGKKCDPVPVEGGEEDLDGRNENSAQGKGGKRGRGKGKRFVFPRVGMVTV
ERRAALPAATVFAIRPRSTGGVVAASTGGILGSTDLVHLQHRETGFFLAA
MPREIEAGDERVELTVVKSPLTSEYWRITRASEREKNATNHILRALAQLK
AALKPLLDEVDRLPLYIGERSISHCPPPVPSARVLRPATIAVAHFHSVIA
RGVGWWLKREPKGADRAMSGATRASVQEGPRIAGQKLKGLGERTGRGAAV
WALARSTSSDMAEDSGLIRKKDRARGSLNSGKYSGVWSVVSAGVTGGSSA
DSTSLDEFYGNPKLGFQLLLREQGVIVALFNAMEKIFRARDNLLMNTLWW
EDTEIVSVSTQHTSLGDTSEAEGAANGENGVENAEARLILRRLVREAMAL
ADFFAKDHVRGKMVLEPFTLLLREMIGSGLGACELLATIRRDNPRTHLNV
TAKRIQEIVGSLPESRDLANSMRLMASICRIGHALLPTVQRLVAVTALVG
DNASASFDHAGSIFGSADVNTTSTTTISVSGSSIAHGGDGIVNGDSDGSE
EVQKDEMDDEVLDREREARMRAGTGAGVGERRSVTFNNPRGLFRYELISN
AEPSGRRVGSRRRGKGHSFSYERNQAPWWSADGTRGIRVKLEGLVKNPLP
TRGQLPRLKELLAQRRMSSNEVVVFEAWLEGGGSSRTVVRVVSRGGLEEF
SGGRGGAGASSSAGDLLEYFVESVKLMSTLCRERHAENIVLLRAMKGTTY
KELMEVVRCETVPISVRGAFALLVERMHLDVAPLLPQPAIRYDRKDEQFD
VRCNTSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014821Ins145_P3_rcpt
IPR016093MIR_motif