prot_H-elongata_contig187581.5120.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig187581.5120.1
Unique Name	prot_H-elongata_contig187581.5120.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	109

Homology

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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.480e-21
Identity = 46/106 (43.40%), Postives = 69/106 (65.09%), Query Frame = 0

Query:    3 LSADCYGATELAMNAVADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKIT 108
            +S +   +  +AM A + A+LWHRRLGH++ R+LD +++ DD G+ + G +  CDVCA+GKS Q  +PKK    D+   FQ+   DLMGP +P A  G++Y+SK  
Sbjct:   20 VSRELDNSPNMAMRAES-ADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKA-TYDVSRHFQVS-TDLMGPISPPARRGFRYVSKFV 122

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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.410e-21
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A LWHRR+GH+N ++LD +++  + G+     + DC  CA+GKS Q  +PK+    D+K PFQL + D +GPF P A GG+KY +K  D
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEA-TYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVD 613

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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.180e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 131

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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.200e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 660

[Close]

BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.230e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 782

[Close]

BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.240e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 660

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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.010e-19
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD +++    G+ + G + DC VC +GKS Q  +PK+     ++ PFQ    D +GPF P A GG+KY +K  D
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALGGFKYATKFVD 373

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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.710e-18
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D  GPF     GG+KY +K  D
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLGGFKYATKFVD 565

[Close]

BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.080e-17
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    3 LSADCYGATELAMNAVADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            L  +   A  +A     +A   HRRLGHLN R++  ++++++  + F  ++  CD+CA+ KS QL++PKKT   +  AP  L Y D+MG   P A GG+ Y+S   D
Sbjct:   88 LGGERSSAGGVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFND 193

[Close]

BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.800e-17
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0

Query:   18 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 109
            V  A+LWHRR+GH+N ++LD +++    G+ + G + DC VC +GKS Q  +PK+     ++ PFQ    D +GPF P A  G+K  +K  D
Sbjct:  638 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLR-PFQHVSVDTLGPFTPTALSGFKVATKFVD 728

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot

BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KBU1_9PHAE	2.480e-21	43.40	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JBV6_9PHAE	3.410e-21	44.57	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KNH5_9PHAE	2.180e-20	43.48	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJN3_9PHAE	2.200e-20	43.48	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	2.230e-20	43.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	2.240e-20	43.48	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KXM1_9PHAE	9.010e-19	42.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYB5_9PHAE	1.710e-18	41.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT61_9PHAE	1.080e-17	37.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JKW9_9PHAE	2.800e-17	40.22	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 16..64 e-value: 1.1E-8 score: 34.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig187581	contig	H-elongata_contig187581:741..1067 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig187581.5120.1	mRNA_H-elongata_contig187581.5120.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig187581 741..1067 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig187581.5120.1 ID=prot_H-elongata_contig187581.5120.1|Name=mRNA_H-elongata_contig187581.5120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
LYLSADCYGATELAMNAVADAELWHRRLGHLNKRTLDFMQRRDDKGITFD
GTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGG
YKYMSKITD

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom