prot_H-elongata_contig18737.5110.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18737.5110.1
Unique Nameprot_H-elongata_contig18737.5110.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length833
Homology
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A6H5KWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP4_9PHAE)

HSP 1 Score: 573 bits (1476), Expect = 1.230e-179
Identity = 386/867 (44.52%), Postives = 487/867 (56.17%), Query Frame = 0
Query:    4 RRLDAPADSCPSSRNDKGIRERADDFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITE---GVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNGELLDGGEGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRSHGESRPSTTKFSPILCLNHLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVVRFAVTTGESTLRVDPEMDDDKHLRRRQ--LSTWYEEARSQLISLSRCSADEEYFLHSRRFWSKKELRDNKGFIRRSPP-----PPQHPSVFGCTTPHALGESLSEGGGESHETAIRRRKGFDKDRTGWLEKVPQNTDTYGQATFGTQRGLAHSEICF-----HSRQTDAASTHGS-----KAGARGDKSGHRAKFETDVWSRPEEKNGDPDKGKPPSLASLTTQDIQSLLKEETXXXXXXXXXXXXVFLLAPDDQVPEDFHWPLEFEKVALPAEDFLKKLHEISGRTISSFKARVLKFVMQRKDMLPADIERQGGHAVACLCAWALEELRDYREFDDWSHLALEAWYEMQR-PRTREQDIPRE---PTLGPGATLFYKSLHRLADVGSSYVLSLFKDLDGSGGVLVRAFDLASFETFWLALSDKQITSFGGNATRSPTHLAAMLARRLKVTVGSATSSRRLIMPPIKTLELRKKKIRSRTKYNGVK---TRGGDSATGDFH-----EAKSLLLPLPTTKSTTIS-----GNLQRHSGQVRRSPPISERGSNKDDIIPQAQNDGKGME 833
            RR  AP     S  +D+ ++      +SPV G G TTFSSVAS  DFQHH+GSDPA+ELLVLK IL REC+L RLEA CG +R+R                  TE   GV+ L+SR+R+AT AVIEAI  WR +M  H PPAF+WHG+NYLL++TNDLNFL GV+ L   LK HPA FCRNPLMLP+TLDEQRR+GEL + G   +SP   +R H Y+VA+VLLDEE  +RER+ ++QES  I A      GE+       SP L   H      +  A   C  ++      + R  V  F+ +        DP + DD+ LRR Q  LSTWYE+ARSQL+SLS   ADEEYFL SRRFWSK+EL D+ G    SPP     PP   +  G  + + +  + + G G   E   R       D TG L       D  G   FG +R   H +  F      +R T     HG      KAG  G  S  R     DVWSRP+ + GD   G   +L+ LT  DI+ +L+E              VFLL P+DQ+P DF WP  FE VALPAEDFL++LHE SG+  SS KA+ L  V+QR+ +LP  IERQGGHAVA LCAWALEEL+D  EF DWS +ALE WYE Q  P    Q+ P +      G    L YK+LH+L  VG+SYVLSLF+   G GG++VRAFD    +TFWL+LS  ++ +FG NATRSP+ LA  L RRLK+    A  ++RL++ PIK +E    K R  T         +  GD    D       EA     P P+ +    +     G+ QR S + RRS P + RGS  DD+ P  + +G G E
Sbjct:   17 RRRGAPGLIACSRSSDEILQRSPSVSLSPVTGPG-TTFSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQLPAAKATADSGTTARNTEDGNGVVALLSRMRDATVAVIEAISVWRKDMTGHLPPAFVWHGDNYLLKITNDLNFLAGVQPLVDTLKMHPARFCRNPLMLPQTLDEQRRDGELCESGVNTTSPGAGKRRHLYQVAQVLLDEEGLERERDYLRQESSKIVA-ATSGRGET-------SPELSGRHGFNAGNVRCAARPCATTSSVRKGGSQRTDVRPFSYSASSFACGRDP-VTDDEELRRHQGGLSTWYEQARSQLVSLSSSPADEEYFLSSRRFWSKEELGDSMG--GSSPPALHRKPPGTIARGGKRSGYTMSAAAASGRGGGSEAGQR-------DATGRLSNDGTYGDNGGADLFG-ERPQNHHQRGFPPPRQQTRSTQGVPAHGQEGGQFKAGGGGGHSSERGG--ADVWSRPD-RFGD---GNSAALSCLTVDDIEQILRELNPLPATVAVCAAVVFLLGPEDQLPSDFLWPQGFEAVALPAEDFLRRLHETSGQRASSSKAQFLAPVLQREHLLPEVIERQGGHAVASLCAWALEELQDCDEFADWSGMALEPWYETQVVPPAHAQENPTDCSDDVDGCEVRLIYKALHKLPHVGASYVLSLFEGKSGEGGLIVRAFDRVRRDTFWLSLSRNKVDAFGSNATRSPSALATALTRRLKMKPDVAAGTQRLVLVPIKKIEPCSDKNRKNTAATSASISLSADGDGTEADPRGVVNAEANPESTPSPSNEDPRAAALPPQGSAQR-SPKPRRSHPPAMRGSRVDDLGPLVEAEGDGSE 856          
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI)

HSP 1 Score: 564 bits (1454), Expect = 9.140e-176
Identity = 378/868 (43.55%), Postives = 486/868 (55.99%), Query Frame = 0
Query:    1 QKHRRLDAPADSCPSSRNDKGIRERADDFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITE---GVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNGELLDGGEGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRSHGESRPSTTKFSPILCLNHLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVVRFAVTTGESTLRVDPEMDDDKHLRRRQ--LSTWYEEARSQLISLSRCSADEEYFLHSRRFWSKKELRDNKGFIRRSPPPPQHPSVF-----GCTTPHALGESLSEGGGESHETAIRRRKGFDKDRTGWLEKVPQNTDTYGQATFGTQRGLAHSEICFHSRQTDAASTHGS----------KAGARGDKSGHRAKFETDVWSRPEEKNGDPDKGKPPSLASLTTQDIQSLLKEETXXXXXXXXXXXXVFLLAPDDQVPEDFHWPLEFEKVALPAEDFLKKLHEISGRTISSFKARVLKFVMQRKDMLPADIERQGGHAVACLCAWALEELRDYREFDDWSHLALEAWYEMQR-PRTREQDIPRE---PTLGPGATLFYKSLHRLADVGSSYVLSLFKDLDGSGGVLVRAFDLASFETFWLALSDKQITSFGGNATRSPTHLAAMLARRLKVTVGSATSSRRLIMPPIKTLELRKKKIRSRTKYNGVKTRGGDSATGDFHEAKSLLLPLPTTKSTTIS-----------GNLQRHSGQVRRSPPISERGSNKDDIIPQAQNDGKGME 833
            ++ RR  AP     S  +D+ ++   +  +SPV G G TTFSSVAS  DFQHH+GSDPA+ELLVLK IL REC+L RLEA CG +R+R                 +TE   GV+ L+SR+R+AT AVIEAI  WR +M  H P AF+WHG+NYLL++TNDLNFL GV+ L   LK HPA FCRNPLMLP+TLDEQRR+GEL + G   +SP  R+R H Y+VA+VLLDEE  +RER+ ++QES  I A      GE+ P  +          +R  +  +   S  +K   G+ R   R     F+ +        DP + DD+ LRR Q  LSTWYE+ARSQL+SLS   ADEEYFL SRRFWSK+EL D+ G    SPP P   S       G  + ++   + + G G   E   R       D TG         D  G   FG +R   H +  F        S  G           KAG  G  S  R     DVWSRP+   G    G   +L+ LT  DI+ +L+E              VFLL P+DQ+P DF WP  FE VALPAEDFL++LHE SG+  S+ KA+ L  V+QR+++LP  IERQGGHAVA LCAWALEEL+   EF DWS +ALE WYE Q  P  R Q+ P +      G    L YK+LH+L  VG+SYVLSLF+   G GG++VRAFD A  +TFWL+LS  ++ +FG NATRSP+ LAA L RRLK     A  ++RL++ P+K +E    K R  T           ++ G   + + ++   P   S   +           G+ QR S Q RRS P + RGS  DD+ P  + +G G E
Sbjct:   14 RRRRRRGAPGLIACSRSSDEVLQRSPNVSLSPVTGPG-TTFSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQLPAAKTTSDNGTTARMTEDGDGVVALLSRMRDATVAVIEAISVWRKDMTGHLPTAFVWHGDNYLLKITNDLNFLAGVQPLVDTLKMHPARFCRNPLMLPQTLDEQRRDGELCESGVDTTSPGARKRRHLYQVAQVLLDEEGLERERDYLRQESSKIAA-ATSGRGETSPELSGRHGFNA-GGVRCAARPYATTSSVRKG--GSQRTDGR----PFSYSASSFACGRDP-VTDDEELRRHQGGLSTWYEQARSQLVSLSSSPADEEYFLSSRRFWSKEELGDSMG--GSSPPAPHRRSPGPIARGGKRSGYSTSAAAASGRGGGAEAGQR-------DATGRFSNDGTCGDNGGDDLFG-ERPQNHQQRGFPPPSQQTRSLQGVPADGQEGVQFKAGGGGGHSSERGG--ADVWSRPDRFGG----GNSAALSCLTVDDIEQILRELDPLPATVAVCAAVVFLLGPEDQLPSDFLWPQGFEAVALPAEDFLRRLHETSGQRASASKAQFLAPVLQRENLLPEAIERQGGHAVASLCAWALEELQGCEEFADWSGMALEPWYETQLVPPARAQEDPTDCSDDVDGCEVRLIYKALHKLPHVGASYVLSLFEGKSGEGGLIVRAFDRARRDTFWLSLSRNKVDAFGSNATRSPSALAAALTRRLKTKPDVAAGTQRLVLLPLKKIEPCFDKKRKNTASTSASVSVSANSDGTEADPRGVVNAKPNPDSQPSNEDPAAAALPPQGSAQR-SPQPRRSHPPAMRGSKVDDLGPLVEAEGDGSE 854          
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A836CMT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT4_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.920e-28
Identity = 77/179 (43.02%), Postives = 102/179 (56.98%), Query Frame = 0
Query:   28 DFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITE-GVIQLMSRIREATAAVIEAIVAWRGNMNQHPPP------------AFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQR 193
            D    V+    + F  VA+  DFQHH+G+DP AEL VLK+IL+RE ++ RLE     +RR SL          +P     + GV++L+  +R+ T  VI A++ WR      PP             AF+W GENYLL+  NDLNFL G++ L   L+ HPA  CRNPLML +TLDEQR
Sbjct:   19 DHQEDVEAGADSAFCGVAAAFDFQHHVGTDPQAELQVLKKILIREGLMERLEGLGEQLRRNSLA---------SPADGTADSGVLELLLSLRDVTVEVIGAVLRWREASGVAPPXXXXXXXXXXXXXAFVWRGENYLLKAVNDLNFLAGIKPLVRALRMHPAKLCRNPLMLQETLDEQR 188          
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: F0YG15_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG15_AURAN)

HSP 1 Score: 134 bits (337), Expect = 3.470e-28
Identity = 118/355 (33.24%), Postives = 160/355 (45.07%), Query Frame = 0
Query:   24 ERADDFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRG-----------NMNQHPPP---------AFLWHGENYLLRVT-NDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNG--ELLDGG--------EGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRSHGESRPSTTKFSPILCLN-----HLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVVRFAVTTGESTLRVDPEMDDDKHLRRRQLSTWYEEARSQLISL 342
            E  DDF       GA  FSSVA+  DF+HH G+DPA+ELLVLK IL RE +L RLE    D+ RR+ R   L E P           + LMS++R+AT  V EAI  WR              +   P          AFLWHG NY L++  +D++F+G +E L+  L    A   RNPLMLP+TLDE R +G    L G         +    PR R +       ++LLDEE      E   ++   +    P    ES P       I         HLR  +    A     ++T   G +A R   +        +TL+     D     R+ +L TW++EA+ QL +L
Sbjct: 2998 EPGDDFAGGGAIPGAAGFSSVAAAFDFEHHAGTDPASELLVLKAILNREALLSRLEVLAEDLVRRAHRAWALREAPPPLDAPQRRVAVDLMSKLRDATLGVCEAIAHWRSASAALAAEVAREESGFAPESYETGGLEHAFLWHGRNYALKMAVSDMDFVGAIEPLAEALGVPSAKMRRNPLMLPRTLDEARADGAGSPLGGAPEEDELATDAPEDPRRREKRRLEAAERLLLDEERL----EAALRQEMVLAGAPPEVVSESPPRRGSLPAIPAQETSQGGHLRGMAAF--AAGAVGETTWAGGAVAARFGALPPG-PPAPATLKSSA--DAGWGPRKHELVTWFDEAQEQLKNL 3343          
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A8J2T192_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T192_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.060e-22
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 0
Query:   41 FSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRV-TNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDE 191
            F+S+ +  DF+ H G+DP  +L VLK IL RE  L  LEA C D+ RR+ R   L E P+             MS +R+ T  + EA++AWRG+ +      FLWHG +Y L+V ++D +F+  VE L+A L        RNPLMLP+TLD+
Sbjct:   93 FASICAACDFEPHEGTDPHCQLAVLKAILSREAALAALEALCEDVARRAHRSWALREPPKPLDQVTRREAADAMSALRDRTLELCEALLAWRGDTDVAEAKPFLWHGRDYALKVASSDSDFVAAVEPLAAALGVDARRMRRNPLMLPRTLDD 244          
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A418B1H0_9STRA (MT domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B1H0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.980e-11
Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 0
Query:   35 GQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQ 192
            G G  T SS A  +  +  + +DP  E+ ++K IL+RE ++ RL+     +R     H+ L   P+         V+ L+   REA+ AVIEAIV W   +    P  ++W+G +Y+ R+ +DLNFLG V+ ++  L   P    RNP M+P ++ ++
Sbjct:   84 GDGCCTRSSCAR-VRVKSPMPTDPQDEIRIIKAILIREGLVTRLKGTTQKLRIGD--HSSLHHGPDG------SSVLTLLLLTREASLAVIEAIVRWYQTLAV--PRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVAPRSMVRNPFMMPTSIADR 230          
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A024TBH3_9STRA (MT domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBH3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-10
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   56 SDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQ 192
            SDP  E+ ++K IL+RE ++ RL+     +R     H+ L   PE         V+ L+   REA+ AVIEAIV W   +    P  ++W+G +Y+ R+ +DLNFLG V+ ++  L   P    RNP M+P ++ ++
Sbjct:  180 SDPQDEIRIIKAILIREGLVTRLKGTTQKLRIGD--HSSLHHGPEG------SSVLTLLLLTREASLAVIEAIVRWYQTLAV--PRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVAPRSMVRNPFMMPTSIADR 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KWP4_9PHAE1.230e-17944.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTD9_ECTSI9.140e-17643.55RNA-binding region-containing protein (RNP-1) n=1 ... [more]
A0A836CMT4_9STRA1.920e-2843.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YG15_AURAN3.470e-2833.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2T192_9STRA9.060e-2241.45Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A418B1H0_9STRA6.980e-1132.91MT domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A024TBH3_9STRA1.040e-1035.04MT domain-containing protein n=2 Tax=Aphanomyces i... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.920.60coord: 499..618
e-value: 2.3E-5
score: 25.8
IPR024743Dynein heavy chain, coiled coil stalkPFAMPF12777MTcoord: 501..620
e-value: 1.5E-6
score: 27.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18737contigH-elongata_contig18737:928..5217 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18737.5110.1mRNA_H-elongata_contig18737.5110.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18737 928..5217 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18737.5110.1 ID=prot_H-elongata_contig18737.5110.1|Name=mRNA_H-elongata_contig18737.5110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=833bp
QKHRRLDAPADSCPSSRNDKGIRERADDFISPVKGQGATTFSSVASTLDF
QHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPE
TPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENY
LLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNGELLD
GGEGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRS
HGESRPSTTKFSPILCLNHLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVV
RFAVTTGESTLRVDPEMDDDKHLRRRQLSTWYEEARSQLISLSRCSADEE
YFLHSRRFWSKKELRDNKGFIRRSPPPPQHPSVFGCTTPHALGESLSEGG
GESHETAIRRRKGFDKDRTGWLEKVPQNTDTYGQATFGTQRGLAHSEICF
HSRQTDAASTHGSKAGARGDKSGHRAKFETDVWSRPEEKNGDPDKGKPPS
LASLTTQDIQSLLKEETPPPATIVVCAAIVFLLAPDDQVPEDFHWPLEFE
KVALPAEDFLKKLHEISGRTISSFKARVLKFVMQRKDMLPADIERQGGHA
VACLCAWALEELRDYREFDDWSHLALEAWYEMQRPRTREQDIPREPTLGP
GATLFYKSLHRLADVGSSYVLSLFKDLDGSGGVLVRAFDLASFETFWLAL
SDKQITSFGGNATRSPTHLAAMLARRLKVTVGSATSSRRLIMPPIKTLEL
RKKKIRSRTKYNGVKTRGGDSATGDFHEAKSLLLPLPTTKSTTISGNLQR
HSGQVRRSPPISERGSNKDDIIPQAQNDGKGME
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024743Dynein_HC_stalk