mRNA_H-elongata_contig18737.5110.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A6H5KWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP4_9PHAE) HSP 1 Score: 573 bits (1476), Expect = 1.230e-179 Identity = 386/867 (44.52%), Postives = 487/867 (56.17%), Query Frame = 1
Query: 10 RRLDAPADSCPSSRNDKGIRERADDFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITE---GVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNGELLDGGEGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRSHGESRPSTTKFSPILCLNHLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVVRFAVTTGESTLRVDPEMDDDKHLRRRQ--LSTWYEEARSQLISLSRCSADEEYFLHSRRFWSKKELRDNKGFIRRSPP-----PPQHPSVFGCTTPHALGESLSEGGGESHETAIRRRKGFDKDRTGWLEKVPQNTDTYGQATFGTQRGLAHSEICF-----HSRQTDAASTHGS-----KAGARGDKSGHRAKFETDVWSRPEEKNGDPDKGKPPSLASLTTQDIQSLLKEETXXXXXXXXXXXXVFLLAPDDQVPEDFHWPLEFEKVALPAEDFLKKLHEISGRTISSFKARVLKFVMQRKDMLPADIERQGGHAVACLCAWALEELRDYREFDDWSHLALEAWYEMQR-PRTREQDIPRE---PTLGPGATLFYKSLHRLADVGSSYVLSLFKDLDGSGGVLVRAFDLASFETFWLALSDKQITSFGGNATRSPTHLAAMLARRLKVTVGSATSSRRLIMPPIKTLELRKKKIRSRTKYNGVK---TRGGDSATGDFH-----EAKSLLLPLPTTKSTTIS-----GNLQRHSGQVRRSPPISERGSNKDDIIPQAQNDGKGME 2499
RR AP S +D+ ++ +SPV G G TTFSSVAS DFQHH+GSDPA+ELLVLK IL REC+L RLEA CG +R+R TE GV+ L+SR+R+AT AVIEAI WR +M H PPAF+WHG+NYLL++TNDLNFL GV+ L LK HPA FCRNPLMLP+TLDEQRR+GEL + G +SP +R H Y+VA+VLLDEE +RER+ ++QES I A GE+ SP L H + A C ++ + R V F+ + DP + DD+ LRR Q LSTWYE+ARSQL+SLS ADEEYFL SRRFWSK+EL D+ G SPP PP + G + + + + + G G E R D TG L D G FG +R H + F +R T HG KAG G S R DVWSRP+ + GD G +L+ LT DI+ +L+E VFLL P+DQ+P DF WP FE VALPAEDFL++LHE SG+ SS KA+ L V+QR+ +LP IERQGGHAVA LCAWALEEL+D EF DWS +ALE WYE Q P Q+ P + G L YK+LH+L VG+SYVLSLF+ G GG++VRAFD +TFWL+LS ++ +FG NATRSP+ LA L RRLK+ A ++RL++ PIK +E K R T + GD D EA P P+ + + G+ QR S + RRS P + RGS DD+ P + +G G E
Sbjct: 17 RRRGAPGLIACSRSSDEILQRSPSVSLSPVTGPG-TTFSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQLPAAKATADSGTTARNTEDGNGVVALLSRMRDATVAVIEAISVWRKDMTGHLPPAFVWHGDNYLLKITNDLNFLAGVQPLVDTLKMHPARFCRNPLMLPQTLDEQRRDGELCESGVNTTSPGAGKRRHLYQVAQVLLDEEGLERERDYLRQESSKIVA-ATSGRGET-------SPELSGRHGFNAGNVRCAARPCATTSSVRKGGSQRTDVRPFSYSASSFACGRDP-VTDDEELRRHQGGLSTWYEQARSQLVSLSSSPADEEYFLSSRRFWSKEELGDSMG--GSSPPALHRKPPGTIARGGKRSGYTMSAAAASGRGGGSEAGQR-------DATGRLSNDGTYGDNGGADLFG-ERPQNHHQRGFPPPRQQTRSTQGVPAHGQEGGQFKAGGGGGHSSERGG--ADVWSRPD-RFGD---GNSAALSCLTVDDIEQILRELNPLPATVAVCAAVVFLLGPEDQLPSDFLWPQGFEAVALPAEDFLRRLHETSGQRASSSKAQFLAPVLQREHLLPEVIERQGGHAVASLCAWALEELQDCDEFADWSGMALEPWYETQVVPPAHAQENPTDCSDDVDGCEVRLIYKALHKLPHVGASYVLSLFEGKSGEGGLIVRAFDRVRRDTFWLSLSRNKVDAFGSNATRSPSALATALTRRLKMKPDVAAGTQRLVLVPIKKIEPCSDKNRKNTAATSASISLSADGDGTEADPRGVVNAEANPESTPSPSNEDPRAAALPPQGSAQR-SPKPRRSHPPAMRGSRVDDLGPLVEAEGDGSE 856
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI) HSP 1 Score: 564 bits (1454), Expect = 9.140e-176 Identity = 378/868 (43.55%), Postives = 486/868 (55.99%), Query Frame = 1
Query: 1 QKHRRLDAPADSCPSSRNDKGIRERADDFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITE---GVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNGELLDGGEGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRSHGESRPSTTKFSPILCLNHLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVVRFAVTTGESTLRVDPEMDDDKHLRRRQ--LSTWYEEARSQLISLSRCSADEEYFLHSRRFWSKKELRDNKGFIRRSPPPPQHPSVF-----GCTTPHALGESLSEGGGESHETAIRRRKGFDKDRTGWLEKVPQNTDTYGQATFGTQRGLAHSEICFHSRQTDAASTHGS----------KAGARGDKSGHRAKFETDVWSRPEEKNGDPDKGKPPSLASLTTQDIQSLLKEETXXXXXXXXXXXXVFLLAPDDQVPEDFHWPLEFEKVALPAEDFLKKLHEISGRTISSFKARVLKFVMQRKDMLPADIERQGGHAVACLCAWALEELRDYREFDDWSHLALEAWYEMQR-PRTREQDIPRE---PTLGPGATLFYKSLHRLADVGSSYVLSLFKDLDGSGGVLVRAFDLASFETFWLALSDKQITSFGGNATRSPTHLAAMLARRLKVTVGSATSSRRLIMPPIKTLELRKKKIRSRTKYNGVKTRGGDSATGDFHEAKSLLLPLPTTKSTTIS-----------GNLQRHSGQVRRSPPISERGSNKDDIIPQAQNDGKGME 2499
++ RR AP S +D+ ++ + +SPV G G TTFSSVAS DFQHH+GSDPA+ELLVLK IL REC+L RLEA CG +R+R +TE GV+ L+SR+R+AT AVIEAI WR +M H P AF+WHG+NYLL++TNDLNFL GV+ L LK HPA FCRNPLMLP+TLDEQRR+GEL + G +SP R+R H Y+VA+VLLDEE +RER+ ++QES I A GE+ P + +R + + S +K G+ R R F+ + DP + DD+ LRR Q LSTWYE+ARSQL+SLS ADEEYFL SRRFWSK+EL D+ G SPP P S G + ++ + + G G E R D TG D G FG +R H + F S G KAG G S R DVWSRP+ G G +L+ LT DI+ +L+E VFLL P+DQ+P DF WP FE VALPAEDFL++LHE SG+ S+ KA+ L V+QR+++LP IERQGGHAVA LCAWALEEL+ EF DWS +ALE WYE Q P R Q+ P + G L YK+LH+L VG+SYVLSLF+ G GG++VRAFD A +TFWL+LS ++ +FG NATRSP+ LAA L RRLK A ++RL++ P+K +E K R T ++ G + + ++ P S + G+ QR S Q RRS P + RGS DD+ P + +G G E
Sbjct: 14 RRRRRRGAPGLIACSRSSDEVLQRSPNVSLSPVTGPG-TTFSSVASAFDFQHHVGSDPASELLVLKHILTRECLLSRLEAVCGSLRKRFQLPAAKTTSDNGTTARMTEDGDGVVALLSRMRDATVAVIEAISVWRKDMTGHLPTAFVWHGDNYLLKITNDLNFLAGVQPLVDTLKMHPARFCRNPLMLPQTLDEQRRDGELCESGVDTTSPGARKRRHLYQVAQVLLDEEGLERERDYLRQESSKIAA-ATSGRGETSPELSGRHGFNA-GGVRCAARPYATTSSVRKG--GSQRTDGR----PFSYSASSFACGRDP-VTDDEELRRHQGGLSTWYEQARSQLVSLSSSPADEEYFLSSRRFWSKEELGDSMG--GSSPPAPHRRSPGPIARGGKRSGYSTSAAAASGRGGGAEAGQR-------DATGRFSNDGTCGDNGGDDLFG-ERPQNHQQRGFPPPSQQTRSLQGVPADGQEGVQFKAGGGGGHSSERGG--ADVWSRPDRFGG----GNSAALSCLTVDDIEQILRELDPLPATVAVCAAVVFLLGPEDQLPSDFLWPQGFEAVALPAEDFLRRLHETSGQRASASKAQFLAPVLQRENLLPEAIERQGGHAVASLCAWALEELQGCEEFADWSGMALEPWYETQLVPPARAQEDPTDCSDDVDGCEVRLIYKALHKLPHVGASYVLSLFEGKSGEGGLIVRAFDRARRDTFWLSLSRNKVDAFGSNATRSPSALAAALTRRLKTKPDVAAGTQRLVLLPLKKIEPCFDKKRKNTASTSASVSVSANSDGTEADPRGVVNAKPNPDSQPSNEDPAAAALPPQGSAQR-SPQPRRSHPPAMRGSKVDDLGPLVEAEGDGSE 854
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A836CMT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT4_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.920e-28 Identity = 77/179 (43.02%), Postives = 102/179 (56.98%), Query Frame = 1
Query: 82 DFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITE-GVIQLMSRIREATAAVIEAIVAWRGNMNQHPPP------------AFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQR 579
D V+ + F VA+ DFQHH+G+DP AEL VLK+IL+RE ++ RLE +RR SL +P + GV++L+ +R+ T VI A++ WR PP AF+W GENYLL+ NDLNFL G++ L L+ HPA CRNPLML +TLDEQR
Sbjct: 19 DHQEDVEAGADSAFCGVAAAFDFQHHVGTDPQAELQVLKKILIREGLMERLEGLGEQLRRNSLA---------SPADGTADSGVLELLLSLRDVTVEVIGAVLRWREASGVAPPXXXXXXXXXXXXXAFVWRGENYLLKAVNDLNFLAGIKPLVRALRMHPAKLCRNPLMLQETLDEQR 188
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: F0YG15_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG15_AURAN) HSP 1 Score: 134 bits (337), Expect = 3.470e-28 Identity = 118/355 (33.24%), Postives = 160/355 (45.07%), Query Frame = 1
Query: 70 ERADDFISPVKGQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRG-----------NMNQHPPP---------AFLWHGENYLLRVT-NDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQRRNG--ELLDGG--------EGASSPRLRRREHYYRVAKVLLDEEDFQRERETIQQESPTITADRPRSHGESRPSTTKFSPILCLN-----HLRRRSCLFIAKSLCQKSTDGTGRLAPRIKVVRFAVTTGESTLRVDPEMDDDKHLRRRQLSTWYEEARSQLISL 1026
E DDF GA FSSVA+ DF+HH G+DPA+ELLVLK IL RE +L RLE D+ RR+ R L E P + LMS++R+AT V EAI WR + P AFLWHG NY L++ +D++F+G +E L+ L A RNPLMLP+TLDE R +G L G + PR R + ++LLDEE E ++ + P ES P I HLR + A ++T G +A R + +TL+ D R+ +L TW++EA+ QL +L
Sbjct: 2998 EPGDDFAGGGAIPGAAGFSSVAAAFDFEHHAGTDPASELLVLKAILNREALLSRLEVLAEDLVRRAHRAWALREAPPPLDAPQRRVAVDLMSKLRDATLGVCEAIAHWRSASAALAAEVAREESGFAPESYETGGLEHAFLWHGRNYALKMAVSDMDFVGAIEPLAEALGVPSAKMRRNPLMLPRTLDEARADGAGSPLGGAPEEDELATDAPEDPRRREKRRLEAAERLLLDEERL----EAALRQEMVLAGAPPEVVSESPPRRGSLPAIPAQETSQGGHLRGMAAF--AAGAVGETTWAGGAVAARFGALPPG-PPAPATLKSSA--DAGWGPRKHELVTWFDEAQEQLKNL 3343
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A8J2T192_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T192_9STRA) HSP 1 Score: 112 bits (280), Expect = 9.060e-22 Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 121 FSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRV-TNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDE 573
F+S+ + DF+ H G+DP +L VLK IL RE L LEA C D+ RR+ R L E P+ MS +R+ T + EA++AWRG+ + FLWHG +Y L+V ++D +F+ VE L+A L RNPLMLP+TLD+
Sbjct: 93 FASICAACDFEPHEGTDPHCQLAVLKAILSREAALAALEALCEDVARRAHRSWALREPPKPLDQVTRREAADAMSALRDRTLELCEALLAWRGDTDVAEAKPFLWHGRDYALKVASSDSDFVAAVEPLAAALGVDARRMRRNPLMLPRTLDD 244
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A418B1H0_9STRA (MT domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B1H0_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.980e-11 Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 103 GQGATTFSSVASTLDFQHHLGSDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQ 576
G G T SS A + + + +DP E+ ++K IL+RE ++ RL+ +R H+ L P+ V+ L+ REA+ AVIEAIV W + P ++W+G +Y+ R+ +DLNFLG V+ ++ L P RNP M+P ++ ++
Sbjct: 84 GDGCCTRSSCAR-VRVKSPMPTDPQDEIRIIKAILIREGLVTRLKGTTQKLRIGD--HSSLHHGPDG------SSVLTLLLLTREASLAVIEAIVRWYQTLAV--PRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVAPRSMVRNPFMMPTSIADR 230
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Match: A0A024TBH3_9STRA (MT domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBH3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.040e-10 Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 1
Query: 166 SDPAAELLVLKRILLRECMLYRLEADCGDIRRRSLRHTMLCERPETPPVAITEGVIQLMSRIREATAAVIEAIVAWRGNMNQHPPPAFLWHGENYLLRVTNDLNFLGGVESLSAILKKHPACFCRNPLMLPKTLDEQ 576
SDP E+ ++K IL+RE ++ RL+ +R H+ L PE V+ L+ REA+ AVIEAIV W + P ++W+G +Y+ R+ +DLNFLG V+ ++ L P RNP M+P ++ ++
Sbjct: 180 SDPQDEIRIIKAILIREGLVTRLKGTTQKLRIGD--HSSLHHGPEG------SSVLTLLLLTREASLAVIEAIVRWYQTLAV--PRPYIWNGRSYVHRMLDDLNFLGHVDVMAEALGVAPRSMVRNPFMMPTSIADR 306 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18737.5110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18737.5110.1 >prot_H-elongata_contig18737.5110.1 ID=prot_H-elongata_contig18737.5110.1|Name=mRNA_H-elongata_contig18737.5110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=833bp QKHRRLDAPADSCPSSRNDKGIRERADDFISPVKGQGATTFSSVASTLDFback to top mRNA from alignment at H-elongata_contig18737:928..5217- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18737.5110.1 ID=mRNA_H-elongata_contig18737.5110.1|Name=mRNA_H-elongata_contig18737.5110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4290bp|location=Sequence derived from alignment at H-elongata_contig18737:928..5217- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18737:928..5217- >mRNA_H-elongata_contig18737.5110.1 ID=mRNA_H-elongata_contig18737.5110.1|Name=mRNA_H-elongata_contig18737.5110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4998bp|location=Sequence derived from alignment at H-elongata_contig18737:928..5217- (Himanthalia elongata Himel1 dioecious)back to top |