prot_H-elongata_contig187335.5109.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187335.5109.1
Unique Nameprot_H-elongata_contig187335.5109.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
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BLAST of mRNA_H-elongata_contig187335.5109.1 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 6.690e-5
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0 
Query:    1 MVARVELQPGDTVILNNHRTMHGRESFEVR 30
            +VAR+ L+PG+ VILNNHR +HGRESF+ R
Sbjct:  380 LVARIVLEPGECVILNNHRALHGRESFKGR 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187335.5109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNM9_9PHAE6.690e-566.67TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003819TauD/TfdA-like domainPFAMPF02668TauDcoord: 3..28
e-value: 2.8E-7
score: 30.6
IPR042098Taurine dioxygenase TauD-like superfamilyGENE3D3.60.130.10coord: 1..35
e-value: 2.5E-9
score: 39.1
NoneNo IPR availableSUPERFAMILY51197Clavaminate synthase-likecoord: 4..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187335contigH-elongata_contig187335:849..998 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187335.5109.1mRNA_H-elongata_contig187335.5109.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187335 849..1004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187335.5109.1 ID=prot_H-elongata_contig187335.5109.1|Name=mRNA_H-elongata_contig187335.5109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MVARVELQPGDTVILNNHRTMHGRESFEVRIPALSQFLIYLNFSSFRGLP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003819TauD/TfdA-like
IPR042098TauD-like_sf