prot_H-elongata_contig187298.5104.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187298.5104.1
Unique Nameprot_H-elongata_contig187298.5104.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length122
Homology
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BLAST of mRNA_H-elongata_contig187298.5104.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.540e-41
Identity = 81/124 (65.32%), Postives = 98/124 (79.03%), Query Frame = 0 
Query:    1 MALSYVVIIVIFMGALVPAVANRNFRLQSKESYIWMNEKRKLALTRAYLLLRNPIDHTVRLKDWIQLMSFLRPDCDQGWASALFKNAKKAEDKFCP--GDEASDRLSKGGFFMLCALGKARFSK 122
            M LSY VI+VIF+GALVPAVANRNF+ QSKESY W+ E+RKLALTRA++LLR   D TV  +DW++LM+ LRPDC+ G  SALF  AKKAED+     G++  +RLSKGGFFMLCALG A FS+
Sbjct:  289 MGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGEDDRNRLSKGGFFMLCALGTASFSR 412
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BLAST of mRNA_H-elongata_contig187298.5104.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 7.250e-35
Identity = 74/124 (59.68%), Postives = 93/124 (75.00%), Query Frame = 0 
Query:    1 MALSYVVIIVIFMGALVPAVANRNFRLQSKESYIWMNEKRKLALTRAYLLLRNPIDHTVRLKDWIQLMSFLRPDCDQGWASALFKNAKKAEDKFCP--GDEASDRLSKGGFFMLCALGKARFSK 122
            M LSY VI+VIF+GALVPAVANRNF+      Y W+ E+R+LALTRA++LLR   D TV  +DW++LM+ LRPDC+ G  SALF  AKKA+D+     G++  +RLSKGGFFMLCALG A FS+
Sbjct:  426 MGLSYGVIMVIFLGALVPAVANRNFQ----HHYNWVKEQRRLALTRAFMLLRREEDGTVGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGEDDRNRLSKGGFFMLCALGTASFSR 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187298.5104.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR41_ECTSI4.540e-4165.32Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE7.250e-3559.68Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..21
score: 0.515
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187298contigH-elongata_contig187298:172..1109 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187298.5104.1mRNA_H-elongata_contig187298.5104.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187298 172..1133 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187298.5104.1 ID=prot_H-elongata_contig187298.5104.1|Name=mRNA_H-elongata_contig187298.5104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MALSYVVIIVIFMGALVPAVANRNFRLQSKESYIWMNEKRKLALTRAYLL
LRNPIDHTVRLKDWIQLMSFLRPDCDQGWASALFKNAKKAEDKFCPGDEA
SDRLSKGGFFMLCALGKARFSK
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