prot_H-elongata_contig187293.5103.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187293.5103.1
Unique Nameprot_H-elongata_contig187293.5103.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length95
Homology
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 4.030e-39
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDR 90
            +DSDAIKLFVGQIPKHMEE+DLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCAR SADAAI+ALHGQRRLDR
Sbjct:   39 KDSDAIKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAALHGQRRLDR 113          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A212CEU7_CEREH (RRM domain-containing protein n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A212CEU7_CEREH)

HSP 1 Score: 108 bits (269), Expect = 6.860e-29
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 92
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG IF+L VI+DK +GLH+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGVS 78          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: UPI0007623B6E (CUGBP Elav-like family member 3 n=1 Tax=Marmota marmota marmota TaxID=9994 RepID=UPI0007623B6E)

HSP 1 Score: 108 bits (271), Expect = 1.390e-28
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSSL 94
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG IF+L VI+DK +GLH+GCAFLTYCAR SA  A SALH Q+ L  VS++
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGVSAV 80          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A851SQB2_CERFA (CELF3 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A851SQB2_CERFA)

HSP 1 Score: 107 bits (266), Expect = 1.610e-28
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 92
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVS 78          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A3Q3DZY3_HIPCM (RRM domain-containing protein n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q3DZY3_HIPCM)

HSP 1 Score: 107 bits (268), Expect = 1.890e-28
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 0
Query:   14 TPQDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSSL 94
            T  ++DAIKLFVGQIP+++EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS+L
Sbjct:   20 TGHEADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVSAL 100          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A7L4CTA8_9AVES (CELF3 protein (Fragment) n=8 Tax=Aves TaxID=8782 RepID=A0A7L4CTA8_9AVES)

HSP 1 Score: 106 bits (264), Expect = 4.070e-28
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 92
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:   10 KEPDAIKLFVGQIPRHLEERDLKPIFEQFGRIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVS 86          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: UPI001C685AF0 (CUGBP Elav-like family member 3 n=1 Tax=Lagopus leucura TaxID=30410 RepID=UPI001C685AF0)

HSP 1 Score: 107 bits (267), Expect = 4.240e-28
Identity = 50/78 (64.10%), Postives = 66/78 (84.62%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSS 93
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS+
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVSA 79          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A803XYZ6_MELGA (RRM domain-containing protein n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=A0A803XYZ6_MELGA)

HSP 1 Score: 107 bits (266), Expect = 6.740e-28
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVS 92
            ++ DAIKLFVGQIP+H+EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVS 78          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A836CK81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK81_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.950e-28
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRL 88
            +D DAIKLFVGQIPKHME D L P+F EFG+IFDL +IRDK +G+HRGCAFLT+C RASA+AAI ALHG R+L
Sbjct:   13 KDPDAIKLFVGQIPKHMESDALLPLFSEFGDIFDLTIIRDKQTGVHRGCAFLTFCTRASAEAAIQALHGNRKL 85          
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Match: A0A4W5N857_9TELE (RRM domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5N857_9TELE)

HSP 1 Score: 105 bits (262), Expect = 9.470e-28
Identity = 49/78 (62.82%), Postives = 67/78 (85.90%), Query Frame = 0
Query:   16 QDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSS 93
            +++DAIKLFVGQIP+++EE DL+P+FE+FG+I++L VI+DK +G+H+GCAFLTYCAR SA  A SALH Q+ L  VS+
Sbjct:    2 KEADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGVST 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187293.5103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV60_ECTSI4.030e-3994.67Trinucleotide repeat containing 4, isoform CRA_d n... [more]
A0A212CEU7_CEREH6.860e-2967.53RRM domain-containing protein n=3 Tax=Boreoeutheri... [more]
UPI0007623B6E1.390e-2865.82CUGBP Elav-like family member 3 n=1 Tax=Marmota ma... [more]
A0A851SQB2_CERFA1.610e-2864.94CELF3 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A3Q3DZY3_HIPCM1.890e-2862.96RRM domain-containing protein n=1 Tax=Hippocampus ... [more]
A0A7L4CTA8_9AVES4.070e-2864.94CELF3 protein (Fragment) n=8 Tax=Aves TaxID=8782 R... [more]
UPI001C685AF04.240e-2864.10CUGBP Elav-like family member 3 n=1 Tax=Lagopus le... [more]
A0A803XYZ6_MELGA6.740e-2864.94RRM domain-containing protein n=1 Tax=Meleagris ga... [more]
A0A836CK81_9STRA8.950e-2873.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4W5N857_9TELE9.470e-2862.82RRM domain-containing protein n=1 Tax=Hucho hucho ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 22..91
e-value: 3.8E-15
score: 66.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..88
e-value: 1.9E-14
score: 53.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 21..94
score: 14.914
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 10..93
e-value: 2.4E-20
score: 74.5
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 19..89
NoneNo IPR availablePANTHERPTHR24012:SF686CUGBP ELAV-LIKE FAMILY MEMBER 1coord: 19..89
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 10..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187293contigH-elongata_contig187293:368..1175 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187293.5103.1mRNA_H-elongata_contig187293.5103.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187293 368..1175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187293.5103.1 ID=prot_H-elongata_contig187293.5103.1|Name=mRNA_H-elongata_contig187293.5103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MGDFSTFVNNGYPTPQDSDAIKLFVGQIPKHMEEDDLRPVFEEFGEIFDL
AVIRDKISGLHRGCAFLTYCARASADAAISALHGQRRLDRVSSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf