prot_H-elongata_contig18712.5099.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18712.5099.1
Unique Nameprot_H-elongata_contig18712.5099.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length530
Homology
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BLAST of mRNA_H-elongata_contig18712.5099.1 vs. uniprot
Match: D7G172_ECTSI (TPX2_importin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G172_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.500e-20
Identity = 67/137 (48.91%), Postives = 88/137 (64.23%), Query Frame = 0 
Query:  399 MQKDLKKMTRRNQLVMERTRQAVHMGNGRSNKPLTVPEGPALKTAGRLGEKVYDSSATKTVDRHG------------AKANAA--AVGRNGLTVPEPFRLSETNRPRKTI------TPQSREESLTFRESMVRMASK 515
            MQ+ LK+MTRRNQ+VMER+R+  + GN RS+KPLTVPE PA+KT GRLG KVY +   K  D+ G            +K N A  A    G TVP PF+LS++NRP          TP+S+E++LTFRES+ R+ +K
Sbjct:    1 MQEQLKQMTRRNQVVMERSRRTAYSGNVRSSKPLTVPESPAMKTVGRLGGKVYAAVGPK--DQVGFSPTHPAKNDPLSKDNLAQLAAQPKGPTVPAPFQLSKSNRPSSRDGGSAPGTPRSKEDTLTFRESLARIENK 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18712.5099.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G172_ECTSI4.500e-2048.91TPX2_importin domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..529
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18712contigH-elongata_contig18712:1452..6123 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18712.5099.1mRNA_H-elongata_contig18712.5099.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18712 1447..6628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18712.5099.1 ID=prot_H-elongata_contig18712.5099.1|Name=mRNA_H-elongata_contig18712.5099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=530bp
MNSPKKKFAVPQALCRSPRLVHATAAAPSDTAAIEARGLSFTLVVGNEAG
DASGVTTGATDDGNASFRNDNLDKPASLANVVLPDGIAKDASTELNEFSG
SVQSPPAKATAVLEGCPSTLVKKMACLTLNEACDHEVVDVIPSSSFDLGE
SVGADDEGNGADDGDTDCECNEMLQNASEGKSSWDSSKKMAAAFEGQKGT
TMTSGSTKSADKTKVAEDTSDPYCHLTVSSGLRSSKLHTIPARGASTTVN
AARRGNGSHWNSQRPSAVAANGPVVSRRQSLSMEEPEPEVAPESAVGGVD
GKANKDISLGKPTNCHMHKQQQQQQQSGVSRRISDGSLPQPRSQQVQHQQ
QEQKLRANPTGRRSLTIAQMPNFRTTQRAERHKSQETTEEAEVRMQLAMQ
KDLKKMTRRNQLVMERTRQAVHMGNGRSNKPLTVPEGPALKTAGRLGEKV
YDSSATKTVDRHGAKANAAAVGRNGLTVPEPFRLSETNRPRKTITPQSRE
ESLTFRESMVRMASKASLLCRRLFKREAL*
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