prot_H-elongata_contig18647.5075.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18647.5075.1
Unique Nameprot_H-elongata_contig18647.5075.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length563
Homology
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BLAST of mRNA_H-elongata_contig18647.5075.1 vs. uniprot
Match: D7FMV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV0_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 7.860e-136
Identity = 293/540 (54.26%), Postives = 339/540 (62.78%), Query Frame = 0 
Query:   45 LALACLALALTASTAQGQMDPAEMQRHIEQQMGGGSLGSNDMEAGNRVGRLISAVGASGADIARSAREHPRTAAAMAVGASTTAWVVTEGRRSGLLLWRRPRISLFRPSDASMSKVLDAAAGAPIASPLRGIILSTLPDPXXXXXXXXXXXXXXHAGSGVETLGGRNKRGSGADKSTRKKVGSGRVRSRSLKRAE----NAGEIHAAIAKARDARSAGGYMETTEHGRGRVKSVCAGVKVGLGLGLYHKFAQGLGNLDVFDGRSDCDLLATDSSEEDLGSTLGLLTHPAWGTWSLSPVRVVIRRETSISESHAARDGSRSHRNESGXXXXXXXXXXXXXXXXXXXXXXKVVGKNEGPGKREKGDEEGGALEHT------------------KTHRQYTLALSAVEGAGWSGTWVFRVTYDADTDEVWFQTTLSQRREAFWTTPGGDQESKVKKVNEDMLERGKKHVAVLKTREHQFARVSSLARRRARDKKILKRDRILNPDKYKRVHRYMREDAHTTGGRTARPVRWGEERRRNDIRLK 562
            L L CL  A    +   QMDPA+MQR I+Q               NR+ +++SAVGA GA  AR AREHPR A A   GA+T  WV  E RRSGLL+   PRISLFRPSDA +S+VL+AAA AP+ASPLRG+ILS L DP    XXXXXXXXXX                                              A EI A +   +     G YM    HG+G VKSVCAGV+VG GLG+YHKFAQGLG LDVFDGRSDC+L+A +SS ED+GSTLGLLT PA GTWSLSP+RVV++RE +++   +  DG  +      XXXXXXXXXXXXXXXXXXXXXX                                           + HRQYTLALSAVEGAGWSGTWVFRVT DA+T+EVWF+T LSQR+ +F TT GGDQ  +V +VN+DML R  +H AVL+ RE QF RVSSLAR RA+D K L RDRIL+PDKYKRVHRYMRED+HTTGG +ARP RWGEERRRNDIRLK
Sbjct:   37 LGLLCLLAASIVPSVGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRIAQMLSAVGAGGASAARCAREHPRAAVAATAGAATALWVGKETRRSGLLVCSSPRISLFRPSDAYLSRVLEAAAEAPVASPLRGVILSPLQDPQGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAEIRATLGIMKSGAGQGTYMHEATHGKG-VKSVCAGVRVGKGLGIYHKFAQGLGKLDVFDGRSDCELMAAESSSEDVGSTLGLLTRPALGTWSLSPLRVVLKRERTLAVPRSDDDGHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERHHRQYTLALSAVEGAGWSGTWVFRVTLDAETEEVWFETKLSQRKGSFGTTAGGDQLVRVTRVNQDMLARANRHSAVLRAREEQFTRVSSLARSRAKDAKDLARDRILHPDKYKRVHRYMREDSHTTGGASARPARWGEERRRNDIRLK 575
[Close]
BLAST of mRNA_H-elongata_contig18647.5075.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.770e-27
Identity = 74/140 (52.86%), Postives = 88/140 (62.86%), Query Frame = 0 
Query:   45 LALACLALALTASTAQGQMDPAEMQRHIEQQMGGGSLGSNDMEAGNRVGRLISAVGASGADIARSAREHPRTAAAMAVGASTTAWVVTEGRRSGLLLWRRPRISLFRPSDASMSKVLDAAAGAPIASPLRGIILSTLPDP 184
            L L CL  A    +A  QMDPA+MQR I+Q               NR+  ++SAVGA GA  A  AR HPR A A   GA+T  WV  E RRSG+L+   PRISLFRPSDA +S VL++AA AP+ASPLRG+ILS L DP
Sbjct:   37 LGLLCLLAASIVPSAGQQMDPAQMQRQIQQXXXXXXXXXXXXXXXNRITHMLSAVGAGGASAAHYARAHPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLSWVLESAAEAPVASPLRGVILSPLQDP 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18647.5075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMV0_ECTSI7.860e-13654.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX2_9PHAE3.770e-2752.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 57..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..61
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..562
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 45..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18647contigH-elongata_contig18647:895..4855 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18647.5075.1mRNA_H-elongata_contig18647.5075.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18647 375..5565 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18647.5075.1 ID=prot_H-elongata_contig18647.5075.1|Name=mRNA_H-elongata_contig18647.5075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=563bp
MFSHGTRSRSVRSISPPNTESLGTRASASTLGQKRKLPTYKATSLALACL
ALALTASTAQGQMDPAEMQRHIEQQMGGGSLGSNDMEAGNRVGRLISAVG
ASGADIARSAREHPRTAAAMAVGASTTAWVVTEGRRSGLLLWRRPRISLF
RPSDASMSKVLDAAAGAPIASPLRGIILSTLPDPDAEEEVENENDDDAHA
GSGVETLGGRNKRGSGADKSTRKKVGSGRVRSRSLKRAENAGEIHAAIAK
ARDARSAGGYMETTEHGRGRVKSVCAGVKVGLGLGLYHKFAQGLGNLDVF
DGRSDCDLLATDSSEEDLGSTLGLLTHPAWGTWSLSPVRVVIRRETSISE
SHAARDGSRSHRNESGSGRGGSASSGNRKLKKKKSRKRKVVGKNEGPGKR
EKGDEEGGALEHTKTHRQYTLALSAVEGAGWSGTWVFRVTYDADTDEVWF
QTTLSQRREAFWTTPGGDQESKVKKVNEDMLERGKKHVAVLKTREHQFAR
VSSLARRRARDKKILKRDRILNPDKYKRVHRYMREDAHTTGGRTARPVRW
GEERRRNDIRLK*
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