prot_H-elongata_contig185503.5019.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig185503.5019.1
Unique Nameprot_H-elongata_contig185503.5019.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
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BLAST of mRNA_H-elongata_contig185503.5019.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.510e-16
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:    1 IVSTVKKVHGKLGQHAEAIDCYRRSIAVRPAAPAYVAWALVVAKLAERAARKRSTKSVRLRPR 63
            ++ T+  VHGKLG++ EAI+CYRRSIA+ PAAPAYVAWALVVAKLAERA R  S+K     P+
Sbjct:  445 LLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKTAAGPK 507
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BLAST of mRNA_H-elongata_contig185503.5019.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.550e-16
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0 
Query:    1 IVSTVKKVHGKLGQHAEAIDCYRRSIAVRPAAPAYVAWALVVAKLAERAARKRSTK 56
            ++ T+  VHGKLG++ EAI+CYRRSIA+ PAAPAYVAWALVVAKLAERA R  S+K
Sbjct:  524 LLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSK 579
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185503.5019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1I2_ECTSI3.510e-1665.08PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A6H5L0Y9_9PHAE6.550e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 7..62
e-value: 1.1E-5
score: 27.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185503contigH-elongata_contig185503:366..578 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185503.5019.1mRNA_H-elongata_contig185503.5019.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig185503 366..578 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig185503.5019.1 ID=prot_H-elongata_contig185503.5019.1|Name=mRNA_H-elongata_contig185503.5019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
IVSTVKKVHGKLGQHAEAIDCYRRSIAVRPAAPAYVAWALVVAKLAERAA
RKRSTKSVRLRPRVSFFFSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf