prot_H-elongata_contig18522.5002.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18522.5002.1
Unique Nameprot_H-elongata_contig18522.5002.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
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BLAST of mRNA_H-elongata_contig18522.5002.1 vs. uniprot
Match: D8LBT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.820e-23
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 0 
Query:    4 SDGKIEDLGRGAVIRLVASLGMGRYAHRFRAFAVTGADLAACTEEDLVQIGVSFR 58
            SD KIEDLGRGAV+RL+ +LGMGRYAHRFRAFAVTG+DLA+CTEEDLVQIGVSFR
Sbjct:   88 SDEKIEDLGRGAVVRLIGNLGMGRYAHRFRAFAVTGSDLASCTEEDLVQIGVSFR 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18522.5002.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBT9_ECTSI8.820e-2387.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 8..57
e-value: 6.9E-6
score: 28.3
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 11..56
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 16..56
e-value: 2.9E-7
score: 30.8
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 16..58
score: 8.805

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18522contigH-elongata_contig18522:6659..6832 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18522.5002.1mRNA_H-elongata_contig18522.5002.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18522 6659..6832 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18522.5002.1 ID=prot_H-elongata_contig18522.5002.1|Name=mRNA_H-elongata_contig18522.5002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
LHRSDGKIEDLGRGAVIRLVASLGMGRYAHRFRAFAVTGADLAACTEEDL
VQIGVSFR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013761SAM/pointed_sf
IPR001660SAM