prot_H-elongata_contig18416.4964.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18416.4964.1
Unique Nameprot_H-elongata_contig18416.4964.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length248
Homology
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.350e-49
Identity = 121/217 (55.76%), Postives = 137/217 (63.13%), Query Frame = 0
Query:   49 KALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKA-----------------PGILLHKLLEVLNRGATGGGGGRGRGVIGNSGRGKGSEQCPPGVVEDLLAMMEQLGQ 248
            ++LPAM+VTYRLAGVDGEATEEVVDSL DSD+A DQDPE KF IARDIAE       EGGL LLL LAQ P        AG      +V+     SP+  + S   D       WEVF+L V+LLRR CMLSANR+DLL+LKA                 PGILLH LLEVL RGA GGG G+  G         G+++CPPGVVEDLLAMMEQLGQ
Sbjct: 7480 ESLPAMMVTYRLAGVDGEATEEVVDSLADSDSAADQDPEVKFGIARDIAE-------EGGLSLLLTLAQPP--------AGPSAAEEEVEN----SPEGLSASGSGD-------WEVFALAVKLLRRSCMLSANRSDLLSLKASACWCLHAAFFFVLFVAPGILLHHLLEVLQRGAAGGGRGQADGAAAAQLGAAGTDRCPPGVVEDLLAMMEQLGQ 7670          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 7.710e-42
Identity = 101/166 (60.84%), Postives = 112/166 (67.47%), Query Frame = 0
Query:   49 KALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVLNRGATGGGGGR 214
            ++LPAM+VTYRLAGVDGEATEEVVDSL DSD+A DQDPE KF IARDIAE       EGGL LLL LAQ P            G    V+     SP+  A S   D       WEVF+L V+LLRR CMLSANR+DLL+LKAPGILLH LLEVL RGA GGG G+
Sbjct: 6479 ESLPAMMVTYRLAGVDGEATEEVVDSLADSDSAADQDPEVKFGIARDIAE-------EGGLSLLLTLAQPPA-----------GPSAAVEEEAAASPEGLAASGSGD-------WEVFALAVKLLRRSCMLSANRSDLLSLKAPGILLHHLLEVLQRGAAGGGRGQ 6619          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.260e-24
Identity = 88/202 (43.56%), Postives = 109/202 (53.96%), Query Frame = 0
Query:   49 KALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVP--PPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVLNRGATGGGGGRGRGVIGNSGRGKGSEQCPPGVVEDLLAMMEQLGQ 248
            + LP M VTYRLAGVDGEATEEVV++L DS A   QDPE++F+    I E        GGLPLLL LA  P  P +  +   GS G                  S+ A T G  R  EV +L +RLLR  CML +NRA L+A+KAPG+LL +L+EVL          RG G    SG   GS +    V + LL ++E L Q
Sbjct: 5486 EVLPPMTVTYRLAGVDGEATEEVVETLVDSAAQASQDPEQQFACTSAIGE-------NGGLPLLLALAHPPQLPHQHLSTEEGSEGG-----------------STIAATVGAMRA-EVCTLALRLLRHCCMLHSNRARLVAIKAPGVLLRRLVEVL----------RGSG----SGTSAGSSESNGAVADSLLQILELLVQ 5648          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S3QBC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBC4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.410e-8
Identity = 58/168 (34.52%), Postives = 81/168 (48.21%), Query Frame = 0
Query:   48 MKALPAMIVTYRLAGVDGEATEEVVD--SLPDSDAATDQDP---------ERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVLN 204
            + +LPAM+VTYRLAGVDGEATE++V+   L D DA  D D          E+++ I R + + R       G+ +LL        R+     G   + +  D  ET       R   A      +       T++LLR   MLS NR  L+  +AP +LL  LL+VLN
Sbjct: 1188 VSSLPAMVVTYRLAGVDGEATEDIVEVGDLVDPDAPPDNDTSRAEYEKQMEKEYGITRAVTKGR-------GVGVLL--------RSLEARVGQILQRIRRDDIETRCAIGGRRKQNATRTLFVKSPPCS--TLKLLRHCAMLSDNRKKLVKAQAPTVLLRLLLDVLN 1338          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S0KAM1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAM1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.840e-7
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 0
Query:   48 MKALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAE 98
            + ++P M+VTYRLAGVDGEATE+VV++L D + +   DPE +F+I RDIAE
Sbjct:  357 ISSMPPMVVTYRLAGVDGEATEDVVEALSDPEGSGGIDPEVEFAITRDIAE 407          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S3WCK1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WCK1_EMIHU)

HSP 1 Score: 59.3 bits (142), Expect = 9.860e-7
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0
Query:   54 MIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMM 135
            M+V YRL G+DGEATEE+V+++ D +AA + DPE +F+++  + E       EGGL LLL L +V    A    AG PGE +
Sbjct:   23 MVVVYRLQGLDGEATEEIVEAI-DEEAAEETDPEAEFALSAVVGE-------EGGLELLLRLLEV----AGMPRAGQPGECI 92          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S2LBI9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LBI9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.170e-5
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   48 MKALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAE 98
            + +LP M+VTYRLAGVDGEATE+VV  L D +     D E++F+I R +AE
Sbjct:  355 VTSLPPMVVTYRLAGVDGEATEDVVSELVDGEEKEKMDEEKEFAITRIVAE 405          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S2MFN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MFN7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-5
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0
Query:   51 LPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLL 113
            LP M+VTYRLAGVDGEATEE +D + D +A   +DPE+ F++    + +R      GGL  LL
Sbjct:  252 LPPMLVTYRLAGVDGEATEETLDVVEDPEALRQEDPEKTFAVT---SVLRTQLKEGGGLRGLL 311          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S1TPZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPZ0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.230e-5
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0
Query:   51 LPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIA 97
            +P M VTYRLAGVDGEATEE +D L D +AA D+ P  +++I   +A
Sbjct:   78 VPPMSVTYRLAGVDGEATEEQLDELEDDNAAADKSPAERYAITEVLA 124          
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S3L477_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L477_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.910e-5
Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 0
Query:   51 LPAMIVTYRLAGVDGEATEEVVDSL-----PDSDA---ATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVL 203
            LP MI  YRLAGVDGEATE+ VD +     PD+DA   A +   E++F + R IAE R       G  +LL   Q        R       +  V+T+  ++ +S  +S      G+            LLR    L++NR  LL  +AP +LL  LLEVL
Sbjct:  550 LPPMIAVYRLAGVDGEATEDTVDEVVDPEAPDADASPEAREAQIEKEFGLTRLIAEGR-------GFYVLLRSIQFTVENELRRIRRDQINLGSVETN--LARESFQKSPPCQ--GLV-----------LLRHCAKLASNRKKLLHARAPTVLLTLLLEVL 688          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE3.350e-4955.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI7.710e-4260.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z9Y3_9STRA1.260e-2443.56E3 ubiquitin-protein ligase UBR4-domain-containing... [more]
A0A7S3QBC4_9STRA4.410e-834.52Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S0KAM1_9STRA1.840e-758.82Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S3WCK1_EMIHU9.860e-745.12Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S2LBI9_9STRA1.170e-554.90Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2MFN7_9STRA2.640e-549.21Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1TPZ0_9STRA5.230e-555.32Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3L477_9STRA6.910e-535.40Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025704E3 ubiquitin ligase, UBR4PFAMPF13764E3_UbLigase_R4coord: 52..98
e-value: 1.0E-9
score: 37.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18416contigH-elongata_contig18416:269..1509 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18416.4964.1mRNA_H-elongata_contig18416.4964.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18416 2..1509 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18416.4964.1 ID=prot_H-elongata_contig18416.4964.1|Name=mRNA_H-elongata_contig18416.4964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp
MVPWIAPLTVLRRCGCSEGWNMHDSKPDGMCTMATFIISVHPRLLVFMKA
LPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVR
AYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSAR
SSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLL
EVLNRGATGGGGGRGRGVIGNSGRGKGSEQCPPGVVEDLLAMMEQLGQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025704E3_Ub_ligase_UBR4