prot_H-elongata_contig183952.4956.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig183952.4956.1
Unique Nameprot_H-elongata_contig183952.4956.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.460e-20
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 0
Query:   16 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 73
            +GS  KCYV +T K GCF+ LDGGVSGRV+LK L++RFVSDPA+EFPPG+LVAGKV++
Sbjct: 1800 VGSTAKCYVVATGKSGCFVILDGGVSGRVLLKHLSDRFVSDPAQEFPPGKLVAGKVLA 1857          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 0
Query:   16 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 73
            +GS  KCYV +T+K GCF+ L+GGVSGRV+LK L++RFVSDPA+EFP G+LVAGKV++
Sbjct: 1742 VGSTAKCYVVATSKSGCFVILNGGVSGRVLLKHLSDRFVSDPAQEFPAGKLVAGKVLA 1799          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A4S384_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S384_OSTLU)

HSP 1 Score: 70.9 bits (172), Expect = 1.280e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    1 SPLSPQLYVDYMALCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 73
            SP  P++  D   L  G R K YV +T+K GCF+ L  G+     L +LA+ F++DPAK FPPG+LV G+++S
Sbjct: 1293 SPTDPEI-TDISNLVPGQRVKGYVKATSKKGCFIALSRGIDAMCKLSNLADSFIADPAKTFPPGKLVEGRIVS 1364          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A2R6XEU3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XEU3_MARPO)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 0
Query:   14 LCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 73
            L +G RT+ YV S +K GCF+ L   V GR+++K+L++ FV+DPA+ F PG +V G++IS
Sbjct: 1411 LSVGLRTQAYVKSASKKGCFVVLSRSVEGRILIKNLSDTFVADPAESFTPGMVVRGRIIS 1470          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A7S2H4N6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4N6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.350e-11
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   13 ALCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 73
            A  +G   + +V +TN  GCF+++  G++GRV LKDLA+RF+ +P  EFP G+LV GKV S
Sbjct:  259 APAVGDVVRGFVLATNGNGCFIQVTKGLTGRVQLKDLADRFIKNPEMEFPSGKLVMGKVKS 319          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A6G0XPZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPZ0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-10
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   16 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 71
            +GS    YV +   GGCF+RL   V+ RV+L+DL++ FV +PA +FPPG LVAG+V
Sbjct: 1292 LGSIVTGYVATVGSGGCFVRLHRSVTARVLLRDLSDDFVKEPAAKFPPGTLVAGRV 1347          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.600e-10
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   17 GSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVI 72
            GS TK YV  T+  GCF+RL   V+ RV++KDLA+ F++ P + FP G+LVAG+V+
Sbjct: 1633 GSVTKGYVVGTSTKGCFVRLSKNVTARVLIKDLADGFITSPMEAFPVGKLVAGRVL 1688          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A7S4MZ58_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZ58_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.600e-10
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 0
Query:   21 KCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 71
            + YV  TNK GCF+RL   V GRVMLK++++ F+ DPA  FP GRLV G+V
Sbjct: 1605 QAYVIDTNKRGCFVRLSRNVEGRVMLKEMSDGFLPDPAAMFPQGRLVVGRV 1655          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A1W0AB06_9STRA (rRNA biogenesis protein rrp5 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB06_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.540e-10
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   16 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 71
            +G   + YV S   GGCF+R+    + RV+L+DL++ +V +PAK+FPPG LVAG+V
Sbjct: 1281 VGDLVQGYVASVTSGGCFVRIHRSRTARVLLRDLSDDYVKEPAKQFPPGTLVAGRV 1336          
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A485LII2_9STRA (Aste57867_21818 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LII2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.690e-9
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   16 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 71
            +G+    YV +   GGCF+RL    + RV+L+DL++ F+ DPA  FPPG LVAG+V
Sbjct: 1309 LGALVSGYVAAVTAGGCFVRLSRSQTARVLLRDLSDDFIKDPAAVFPPGTLVAGRV 1364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LPP1_9PHAE2.460e-2070.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRR9_ECTSI1.030e-1867.24rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A4S384_OSTLU1.280e-1245.21Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A2R6XEU3_MARPO2.130e-1148.33Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S2H4N6_9STRA5.350e-1149.18Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6G0XPZ0_9STRA1.900e-1051.79Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W7TCI2_9STRA2.600e-1051.79Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidace... [more]
A0A7S4MZ58_9STRA2.600e-1056.86Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1W0AB06_9STRA3.540e-1048.21rRNA biogenesis protein rrp5 n=1 Tax=Thraustotheca... [more]
A0A485LII2_9STRA1.690e-948.21Aste57867_21818 protein n=1 Tax=Aphanomyces stella... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 12..73
e-value: 2.2E-10
score: 42.3
NoneNo IPR availablePANTHERPTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5coord: 9..73
IPR003029S1 domainPFAMPF00575S1coord: 17..71
e-value: 1.9E-5
score: 24.9
IPR003029S1 domainPROSITEPS50126S1coord: 17..73
score: 12.349
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183952contigH-elongata_contig183952:46..264 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183952.4956.1mRNA_H-elongata_contig183952.4956.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig183952 46..264 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig183952.4956.1 ID=prot_H-elongata_contig183952.4956.1|Name=mRNA_H-elongata_contig183952.4956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
SPLSPQLYVDYMALCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLA
NRFVSDPAKEFPPGRLVAGKVIS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003029S1_domain
IPR012340NA-bd_OB-fold