prot_H-elongata_contig183116.4920.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig183116.4920.1
Unique Nameprot_H-elongata_contig183116.4920.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length273
Homology
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BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.540e-41
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 0 
Query:    3 VSTVCGFCGDLGCHTTINAPSGKAAPVMHSTCPYAPRKDARDAAVQLSLKSARAGSDTSLCTNIVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGAGTERTNKFKKDYTVSEMEESKVLKKFKAGKLCPRRDTGS--PPP 142
            VSTVCGFCG +GC +TI+ P G+A P++HSTCP APR DAR  AV L+L SARA SDTS CTN+V+KC  C Q+ YIW YGM DHV RC   + LV  GT   +KFK+  T+SE E++KVL K KAG+   RRD G+  PPP
Sbjct: 1088 VSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPR-RRDQGNTLPPP 1227
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BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 8.180e-39
Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 0 
Query:    2 QVSTVCGFCGDLGCHTTINAPSGKAAPVMHSTCPYAPRKDARDAAVQLSLKSARAGSDTSLCTNIVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGAGTERTNKFKKDYTVSEMEESK 121
            +VST CGFCG +G  TTI+ P GKA P++HSTCP APR DAR  AV L+L SARAGSDTSLCTN+V KC FC Q  YIWKY M+DH+ RC   D LV  GT   N FK+  T+SE E++K
Sbjct:  410 KVSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTGADN-FKETCTISESEKAK 528
[Close]
BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.490e-22
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 0 
Query:   66 IVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGAGTERTNKFKKDYTVSEMEESKVLKKFKAGKLCPRRDTGSP--PPGARRSVSGNGAVGSGVPGT 161
            +V+KC+FC Q+TYIWKYGM++HV RC  ED LV AGT   ++FK+ YT+SE E++KVL+KFKAG+   RR  G+   P GA  S  GNG  G  + GT
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPR-RRGQGNEALPTGALGSTEGNGTFGRNMSGT 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183116.4920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE1.540e-4159.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE8.180e-3961.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI4.490e-2254.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183116contigH-elongata_contig183116:16..834 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183116.4920.1mRNA_H-elongata_contig183116.4920.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig183116 10..834 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig183116.4920.1 ID=prot_H-elongata_contig183116.4920.1|Name=mRNA_H-elongata_contig183116.4920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
MQVSTVCGFCGDLGCHTTINAPSGKAAPVMHSTCPYAPRKDARDAAVQLS
LKSARAGSDTSLCTNIVMKCIFCFQETYIWKYGMTDHVARCRNEDTLVGA
GTERTNKFKKDYTVSEMEESKVLKKFKAGKLCPRRDTGSPPPGARRSVSG
NGAVGSGVPGTWPQGEQEEEEEEGDDDDEEQEEEEQEQEEEEEEEEDDDE
DEDQEDQDGGKDDEEGDGWEEGVVEGQRGRKRRRAGSSSCSSEAPHENVQ
DPVRMSKRGRTLRAFRRVDFAP*
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