prot_H-elongata_contig182528.4896.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig182528.4896.1
Unique Nameprot_H-elongata_contig182528.4896.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.730e-12
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0
Query:    9 CAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVTLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQIITQ 104
            CAVC+EG+ S  Q++C  C       A+  + A+  VAL  + LV+A LVRV D    + +    + L   RD +V+A+PLT+IKIV+V WQI+TQ
Sbjct:  657 CAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQ 752          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.870e-7
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0
Query:    8 DCAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVTLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQIITQ----VRVSFPS 111
            DCAVCE  ++  L + C  C  S +   V   A   +VA+F V     +L+  E     E  G   R    FR  V+RA+P+ A+KIV+V WQI+TQ      V++PS
Sbjct:  524 DCAVCETDYSPSLAHTCTRCSSSRRQGLVAATAIAALVAVFAVATFFKFLLSTE----VEEGGNIGR----FRRRVLRAVPVQALKIVVVVWQILTQFADVANVTYPS 623          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.470e-5
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0
Query:    9 CAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVTLVVAYLVRVED--RPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQIITQ 104
            CAVC  G++      C +C    K  A+  AAA+  +AL  V  +V+ LV V +   P  +GS    R    ++  V + +PLTA+KIV+V WQI+TQ
Sbjct:  635 CAVCSAGYSPGYSRTCKSCMGDSKKSALVFAAAIGALALAAVVALVSRLVSVVEVGPPQQQGSKGWRRTCSAWQARVRQTVPLTAVKIVVVVWQIVTQ 732          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 6.760e-5
Identity = 31/96 (32.29%), Postives = 51/96 (53.12%), Query Frame = 0
Query:    9 CAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVTLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQIITQ 104
            CAVC+  ++  L + C  C  S +      AA  +IV +F +  +  Y++  E     +G   C      FR MV+ A+P+ ++KI++V WQI+TQ
Sbjct:  902 CAVCKTDYSPSLAHTCTHCSSSRRRGLTVIAAIAVIVTVFAIVAIFQYMLSTEHE---DGILGC------FRRMVLGAVPVESLKIIVVVWQILTQ 988          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE2.730e-1242.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4F7_9PHAE1.870e-737.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI1.470e-537.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1E0_ECTSI6.760e-532.29EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..38
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182528contigH-elongata_contig182528:392..796 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182528.4896.1mRNA_H-elongata_contig182528.4896.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig182528 392..1036 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig182528.4896.1 ID=prot_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MYNLFSKDCAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVV
TLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQ
IITQVRVSFPSGVTIASNVCKLCDVGSGACTRLA*
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