prot_H-elongata_contig182234.4884.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig182234.4884.1
Unique Nameprot_H-elongata_contig182234.4884.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length188
Homology
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.170e-46
Identity = 102/186 (54.84%), Postives = 133/186 (71.51%), Query Frame = 0
Query:    5 CPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            CPC   S +SF+M G T+V    VN+AV++D SGSV   ++ + KEFAKN  A+FA+ NLF NGG+AS+ QF+SD    + GTFYSLEDFN FVDA+    GGTDI  GI++ R LL+A+P+A++ +MIV TDG +    +E+D ARA+G  LYAVGVGS  S + LLAI G E NVF VD+FE+L
Sbjct:   51 CPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSVGTADWELSKEFAKNTVASFAEQNLFTNGGSASFAQFASDAS--EGGTFYSLEDFNAFVDADVKHSGGTDIIDGIAKGRELLSASPAATS-FMIVTTDGAAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 233          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.390e-45
Identity = 103/188 (54.79%), Postives = 133/188 (70.74%), Query Frame = 0
Query:    3 TTCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            T CPC   S +SF+M G T+V    VN+AV++D SGSV   ++ + KEFAKN  A+FA+ NLF NGG+AS+ QFSS     + GTFYSLEDFN FVDA+    GGTDI  GI++ R LL+A+P+A++ +MIV TDG +    +E+D ARA+G  LYAVGVGS  S + LLAI G E NVF VD+FE+L
Sbjct:   66 TNCPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSVSTADWELSKEFAKNTVASFAEQNLFTNGGSASFAQFSSSAS--EGGTFYSLEDFNAFVDADAKYSGGTDIIDGIAKGRELLSASPAATS-FMIVTTDGAAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 250          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.350e-43
Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 0
Query:    5 CPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            CPC   S +SF+M G T+V    VN+AV++D S SV   ++ + KEFAKN  A+FA  NLF NGG+AS+ QFSSD    + GTFYSLEDFN FVDA+    GGTDI  GI++ R LL+A+P+ ++ +MIV TDG++    +E+D ARA+G  LYAVGVGS  S + LLAI G E NVF VD+FE+L
Sbjct:   58 CPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASVSVGTADWELSKEFAKNTVASFAQQNLFTNGGSASFAQFSSDAS--EGGTFYSLEDFNAFVDADAKYSGGTDIIDGIAKGRELLSASPTTTS-FMIVTTDGVAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 240          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.110e-41
Identity = 97/188 (51.60%), Postives = 133/188 (70.74%), Query Frame = 0
Query:    4 TCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDAND-YIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            TCPC     +SF+M G T+V    VN+AV++D SGSV ++ + +   FAKN  ++FAD NLF NGG+AS  QFS+     + GTFYSLEDFNDFVD +  Y   GT+I AGI++ R LLNA+P+ ++ +MIV+TDG S+   +E+D ARA+G  +YAVGVGS  ++ +LL IAG + N FSVDDF++L
Sbjct:   36 TCPCDSDGQYSFTMEGKTTVTANTVNVAVIIDSSGSVNSDEWDMSIAFAKNAVSSFADQNLFTNGGSASIAQFSNSAS--EGGTFYSLEDFNDFVDGSTKYQSQGTNIIAGIAKGRELLNASPTTTS-FMIVITDGQSSSPKDEADAARAEGTIVYAVGVGSGPTESVLLDIAGDDSNKFSVDDFDEL 220          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D8LLU2_ECTSI (Similar to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.360e-40
Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 0
Query:    4 TCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDAND-YIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIGN-ESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            TCPC     +SF+M G T+V    VN+AV++D SGSV  + + +   FAK+  ++FAD NLF NGG+AS  QFSS     + GTFYSLEDFN FVD N  Y  GGTDI  GI++ R LL A+P A+ ++MIV TDG S+    E+D AR +G  +YAVGVG+  + +ILL I G E NVF VD F++L
Sbjct:   36 TCPCDSDGQYSFTMEGKTTVTANTVNVAVIIDSSGSVDDDEWDMSMAFAKDAVSSFADQNLFTNGGSASIAQFSSSAS--EGGTFYSLEDFNAFVDGNTKYSSGGTDIIDGIAKGRELLKASP-ATTSFMIVTTDGQSSSPKAEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDEL 220          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5JR61_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.300e-37
Identity = 87/166 (52.41%), Postives = 116/166 (69.88%), Query Frame = 0
Query:   27 VNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDY---IGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDG-ISTIGNESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            VN+AV++D SGSV   ++ +  EFAKN  A+FA+ NLF NGG+AS+ QFSS     + GTFYSLEDF+ FVDA       GG T+I +GI++ R LL A+P+ ++ YMIV TDG   +  +E+D ARA+G  +YAVGVGS  + + LLAI G E NVF VD+FE+L
Sbjct:  108 VNVAVIIDSSGSVSTADWELSMEFAKNTVASFAEQNLFTNGGSASFAQFSSSAS--EGGTFYSLEDFDAFVDAETKYATFGGSTNIISGIAKGRELLGASPTTTS-YMIVTTDGEADSPQDEADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEEL 270          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 6.910e-35
Identity = 91/195 (46.67%), Postives = 122/195 (62.56%), Query Frame = 0
Query:    1 FSTTCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAEN--FLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIGN----ESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            F+ +CPCG  S  +F + G TSV    VN+AV++D SGS+   +  FL+EKEFAKN+ A+FA  NLF NGGTASY  FS      D GTF S  +FN+FVD   +I G T+I+AG+S+ R LL    S   +++I++TDG    G     E+D AR +G  +YAVGVG  VS+  LL+I G   NVF   +F +L
Sbjct:   40 FAPSCPCGAGSELTFQIEGETSVEANKVNVAVIIDSSGSIFDIDGAFLLEKEFAKNVAASFAAKNLFTNGGTASYASFSDAAS--DGGTFGSEAEFNEFVDNASWIEGDTNIEAGLSKGRELLANGTSTRTSFLILITDGDWNRGGDPQIEADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTEL 232          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.940e-35
Identity = 88/181 (48.62%), Postives = 122/181 (67.40%), Query Frame = 0
Query:   11 SFSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTI--GNESDEARADGIT-LYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            S +F+M GAT++   +VN+ +V+DGSGS+++ ++++E++FAK+  AAFA  N+F NGGTASYVQFS+     D GTF S E F++ VD+    GG TDI  GI   R LLN  P AS ++M+++TDG S       + E RAD  T ++AVGVGS +S + LL IAG E NVFSV +F  L
Sbjct:   34 SLTFTMEGATTLRTNIVNVVIVVDGSGSIVSSDWILEQQFAKDTVAAFARRNIFDNGGTASYVQFSTSTY--DEGTFTSTESFDEHVDSVIQWGGDTDIADGIIAGRALLNENP-ASFSFMVLITDGESYTDPSTAAQETRADNTTTIFAVGVGSQISTETLLDIAGEESNVFSVTNFSSL 211          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: UPI0016028F1F (collagen alpha-3(VI) chain-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016028F1F)

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-12
Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 0
Query:   32 VLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDT-GTFYSLEDFNDFVDANDYIGGGTDIDAGISEARV----LLNAAPSASAAYMIVLTDGIS--TIGNESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            VLDGSGSV  +NF   K F K +  +FA   +  +    S  Q+S+ V  +    T+ S+ + N  VDA  Y GGGT     + E R       N     +    I+LTDG+S  T+   +  A   GI+LY VG+GSSV  + LLAI G+ DNVFS+ +F  L
Sbjct: 1180 VLDGSGSVGHDNFQRMKSFVKRVAGSFA---IGPSSAQISLFQYSNFVMQEFALDTYESIGEINQAVDAVMYQGGGTATGLALYEMRQYGFSFANGGRPGTRRVAILLTDGMSSDTVDKHAMAAWQAGISLYVVGIGSSVDMNELLAIGGTPDNVFSLGNFGQL 1340          
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: UPI001600741D (uncharacterized protein LOC118432772 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600741D)

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-11
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 0
Query:   27 VNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDD-TGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAA----YMIVLTDGIS--TIGNESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 188
            V+L  +LDGSGSV   NF + K+F +++  +F   N+  +      VQFS  V ++    TF +       VD   Y+ G T   A I   R    + P+ + A    ++IV+TDG+S   +   +  AR +GI+++AVG+GS V  D LL IAG+      ++DF  L
Sbjct: 2228 VDLVFLLDGSGSVTEANFELVKDFTQDVIRSF---NVSTSATRVGVVQFSDTVRTEFFLNTFQTKSQVLQAVDGLGYLQGNTLTGAAIDFVRTSTFSTPAGNRAGQPDFLIVVTDGLSQDNVAIPAQTARNNGISIFAVGIGSEVDADTLLQIAGTPSRTLQINDFAGL 2393          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY49_ECTSI1.170e-4654.84Similar to collagen, partial n=2 Tax=Ectocarpus si... [more]
A0A6H5JRK3_9PHAE6.390e-4554.79VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHN6_ECTSI3.350e-4354.30Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JNZ2_9PHAE1.110e-4151.60VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLU2_ECTSI1.360e-4051.06Similar to integrin alpha Hr1-like n=1 Tax=Ectocar... [more]
A0A6H5JR61_9PHAE4.300e-3752.41VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G513_ECTSI6.910e-3546.67VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCW7_9PHAE6.940e-3548.62VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI0016028F1F1.700e-1238.41collagen alpha-3(VI) chain-like n=1 Tax=Branchiost... [more]
UPI001600741D1.100e-1133.73uncharacterized protein LOC118432772 n=1 Tax=Branc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 26..187
e-value: 5.0E-11
score: 52.6
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 28..187
e-value: 4.5E-21
score: 75.9
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 28..188
score: 18.107
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 23..188
e-value: 2.5E-29
score: 104.6
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 23..188
NoneNo IPR availablePANTHERPTHR24020:SF50COLLAGEN, TYPE XXI, ALPHA 1coord: 28..186
NoneNo IPR availablePANTHERPTHR24020FAMILY NOT NAMEDcoord: 28..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182234contigH-elongata_contig182234:77..1246 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182234.4884.1mRNA_H-elongata_contig182234.4884.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig182234 77..1246 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig182234.4884.1 ID=prot_H-elongata_contig182234.4884.1|Name=mRNA_H-elongata_contig182234.4884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
FSTTCPCGVTSFSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEF
AKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDAN
DYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIGNESDEARA
DGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf