prot_H-elongata_contig18131.4849.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18131.4849.1
Unique Nameprot_H-elongata_contig18131.4849.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
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BLAST of mRNA_H-elongata_contig18131.4849.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 7.130e-40
Identity = 67/124 (54.03%), Postives = 92/124 (74.19%), Query Frame = 0 
Query:    3 LSFVTLAAAWVSIALGDGIAYLVVRETEGNCFEADDCPEEPCGGHECVCWKPDGSVLCSGGSSLRYCLNYGGEACGDLEDSKEWLLCSSIMLLIVAFFSTCSLVASVSTCCFCKRVIIVGSSEE 126
            LS VTLAA+ VSI LG+G  +L+VR+  GNC + DDCP + C    CVCW+PDG+ +CS   S+RYC+ +GG++C D++DS+  LL S I+L+I+AF S  SLV +V+TC +CKR I+V SSEE
Sbjct:   95 LSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESSEE 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18131.4849.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE7.130e-4054.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..115
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 116..132
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.874
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 92..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18131contigH-elongata_contig18131:3043..4424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18131.4849.1mRNA_H-elongata_contig18131.4849.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18131 758..5192 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18131.4849.1 ID=prot_H-elongata_contig18131.4849.1|Name=mRNA_H-elongata_contig18131.4849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MFLSFVTLAAAWVSIALGDGIAYLVVRETEGNCFEADDCPEEPCGGHECV
CWKPDGSVLCSGGSSLRYCLNYGGEACGDLEDSKEWLLCSSIMLLIVAFF
STCSLVASVSTCCFCKRVIIVGSSEEPDSSWR*
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