prot_H-elongata_contig18072.4820.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18072.4820.1
Unique Nameprot_H-elongata_contig18072.4820.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length527
Homology
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BLAST of mRNA_H-elongata_contig18072.4820.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 3.090e-118
Identity = 320/495 (64.65%), Postives = 377/495 (76.16%), Query Frame = 0 
Query:    8 PPVVGNEVRRLDVLDVSNNIGISGILPESYSVLQMLFADDTALSGSQLPLFVD-TASGSRYKWK-----HNESVCGSIEPSPDEEIVAIALDPSYDNFSLCTCDNGFESSRGS--CTKCSRGWYRGVDQDD--INFEMCVACPPNSTTLLNGSWLKGQCVCLVNFYDEQGGYGPGPSXXXXXXXXXXXXXXXXNVASCKCEQGYILDVTVSECKACLAGKYKPVYGNQAELCLPCPAGTSSDEIGASSSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQQVADEGSSQCSSEVSQDGTLIGLYLLIAGIILVVLTLVWVFLQKYFGTEVPVTEKVHMKLNEEMKTFIYGQHSTPPHRVAIHRDWNSLFSVVEILDLMSDLGAYASLLYTAALTGAMKIVYTVVVAFALTASLHGVQTRAIIILEMHEERTHGLAI 492
            P VV  + RR+D+LDVS+N    G +P SYS L +LFA++T LSG  LP F+D T + +   W      H+  VC + +PS DE + A+ LD +YD +S+CTC++G + S G   C++C  G YR ++++D  +   +C  CP NSTT+ NGSWLK QCVC +NFYDEQGG    PSXXXXXXXXXXXXXX  N+ASC+CE G I + T   C++C+AG YKP YGN   LCLPC AGT SD +GA+S      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   QVA+EGS++C+ E S+DGTLIGLYLLIAGIILVV TLV VFLQK+ G  +PV EKVHMKLNEEMK+FIYGQ           + W SLFS VEI+DLMSDLGAYASLLYTAALTGAMK+VYT+VVAFAL ASLHGV TRA+IIL+M E  +H + +
Sbjct:  252 PRVVDTDNRRIDLLDVSDNGNFVGEVPASYSELLILFAENTGLSGLDLPDFIDATTTTAAGAWNEKSTVHDLFVCPAFKPSADENVAAVTLDHAYDGYSVCTCNDGLQGSGGDSECSECPLGSYRNLEKEDDPLAEGVCSPCPSNSTTMQNGSWLKSQCVCAINFYDEQGGADSEPSXXXXXXXXXXXXXXAVNIASCECEPGRIFNTTSRACESCVAGTYKPAYGNHVGLCLPCSAGTYSDTVGATSQYDCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-NQVANEGSAECTDEFSEDGTLIGLYLLIAGIILVVFTLVGVFLQKHCGDAIPVKEKVHMKLNEEMKSFIYGQ-----------QFWISLFSGVEIMDLMSDLGAYASLLYTAALTGAMKVVYTIVVAFALVASLHGVHTRAMIILDMQEYLSHHIGV 734
[Close]
BLAST of mRNA_H-elongata_contig18072.4820.1 vs. uniprot
Match: L1IFY6_GUITC (EGF-like domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFY6_GUITC)

HSP 1 Score: 59.7 bits (143), Expect = 1.460e-5
Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 0 
Query:  111 SRGSCTKCSRGWYRGVDQDDINFEMCVACPPNSTTLLNGSWLKGQC-VCLVNFYDEQGGYGPGPSXXXXXXXXXXXXXXXXNVASCKCEQGYILDVTVSECKACLAGKYKPVYGNQAELCLPCPAGTSS 238
            SR +C+ C+ G+Y      D     CVACP ++ + LN   L G C  C  N    Q                         V  C C++GY  ++T   C AC+AGKYK +YG+  + CLPCP G +S
Sbjct: 2096 SRFNCS-CASGFY------DTGNRSCVACPVSTVSSLN---LFGSCSFCPANMIKLQN--------------------QTDGVEYCACDRGY--EMTGGICSACVAGKYKDMYGD--DPCLPCPTGATS 2190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18072.4820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVL6_ECTSI3.090e-11864.65Hypothetical leucine rich repeat and GCG domain-co... [more]
L1IFY6_GUITC1.460e-533.33EGF-like domain-containing protein n=1 Tax=Guillar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011641Tyrosine-protein kinase ephrin type A/B receptor-likeSMARTSM01411GCC2_GCC3_2coord: 295..346
e-value: 1.3E-4
score: 31.4
coord: 250..289
e-value: 0.0096
score: 25.1
coord: 107..156
e-value: 0.001
score: 28.4
coord: 200..249
e-value: 5.6E-11
score: 52.5
IPR011641Tyrosine-protein kinase ephrin type A/B receptor-likePFAMPF07699Ephrin_rec_likecoord: 112..156
e-value: 4.6E-6
score: 26.3
coord: 200..249
e-value: 7.9E-8
score: 31.9
coord: 286..329
e-value: 8.5E-7
score: 28.6
NoneNo IPR availableGENE3D2.10.50.10coord: 203..266
e-value: 5.5E-9
score: 37.9
coord: 104..171
e-value: 6.7E-9
score: 37.6
NoneNo IPR availablePANTHERPTHR46104FAMILY NOT NAMEDcoord: 77..264
coord: 265..349
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 466..527
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 357..378
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..356
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 443..465
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 379..442
NoneNo IPR availableTMHMMTMhelixcoord: 443..465
NoneNo IPR availableTMHMMTMhelixcoord: 356..378
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 175..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18072contigH-elongata_contig18072:758..4823 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18072.4820.1mRNA_H-elongata_contig18072.4820.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18072 758..4823 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18072.4820.1 ID=prot_H-elongata_contig18072.4820.1|Name=mRNA_H-elongata_contig18072.4820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=527bp
MHVKGKLPPVVGNEVRRLDVLDVSNNIGISGILPESYSVLQMLFADDTAL
SGSQLPLFVDTASGSRYKWKHNESVCGSIEPSPDEEIVAIALDPSYDNFS
LCTCDNGFESSRGSCTKCSRGWYRGVDQDDINFEMCVACPPNSTTLLNGS
WLKGQCVCLVNFYDEQGGYGPGPSCVECPSGSRTLTAGATNVASCKCEQG
YILDVTVSECKACLAGKYKPVYGNQAELCLPCPAGTSSDEIGASSSSSCV
SCPLGFYGDLYGASSVDECKECPAGTYGVVKGLSSESMCTACWAGFYSPT
VGANSSSTCIACPSNHSQPIAGAGSRGDCIPCNSGQQVADEGSSQCSSEV
SQDGTLIGLYLLIAGIILVVLTLVWVFLQKYFGTEVPVTEKVHMKLNEEM
KTFIYGQHSTPPHRVAIHRDWNSLFSVVEILDLMSDLGAYASLLYTAALT
GAMKIVYTVVVAFALTASLHGVQTRAIIILEMHEERTHGLAITGNNMLYF
EKQFNILQIMTQKRTCRRHVPFDGGNK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR009030Growth_fac_rcpt_cys_sf