prot_H-elongata_contig180310.4797.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig180310.4797.1
Unique Nameprot_H-elongata_contig180310.4797.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length60
Homology
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: D8LB06_ECTSI (WD repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB06_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.740e-26
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:   11 KQVWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 60
            +QVWNT TGDELLTLDGHRNVVYAIAFNNPWG+KIITGSFDKTCKLWNAE
Sbjct:  125 EQVWNTTTGDELLTLDGHRNVVYAIAFNNPWGDKIITGSFDKTCKLWNAE 174          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A812TQF9_SYMMI (DAW1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TQF9_SYMMI)

HSP 1 Score: 96.7 bits (239), Expect = 8.730e-23
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 0
Query:   14 WNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 60
            WNT TGDELLTL+GHRNVVYAIAFNNP+G+KIITGSFDKTCKLW+AE
Sbjct:    1 WNTITGDELLTLEGHRNVVYAIAFNNPYGDKIITGSFDKTCKLWSAE 47          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: Q9D4T2_MOUSE (Uncharacterized protein n=1 Tax=Mus musculus TaxID=10090 RepID=Q9D4T2_MOUSE)

HSP 1 Score: 87.8 bits (216), Expect = 2.160e-19
Identity = 37/47 (78.72%), Postives = 45/47 (95.74%), Query Frame = 0
Query:   14 WNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 60
            W+TA+G+EL TL+GH+NVVYAIAFNNP+G+KI TGSFDKTCKLW+AE
Sbjct:    8 WDTASGEELHTLEGHKNVVYAIAFNNPYGDKIATGSFDKTCKLWSAE 54          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A669DGY0_ORENI (Uncharacterized protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A669DGY0_ORENI)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-18
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   13 VWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 60
            VW+TA+G EL  L+GHRNVVYAIAFNNP+G+KI TGSFDKTCKLW AE
Sbjct:    9 VWDTASGTELHVLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWCAE 56          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A2K6F3V9_PROCO (Dynein assembly factor with WD repeats 1 n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6F3V9_PROCO)

HSP 1 Score: 85.9 bits (211), Expect = 1.310e-18
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 0
Query:   13 VWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNA 59
            +W+TA+G+EL TL+GHRNVVYAIAFNNP+G+KI TGSFDKTCKLW+ 
Sbjct:    5 LWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSV 51          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A812AXW2_SEPPH (DAW1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812AXW2_SEPPH)

HSP 1 Score: 81.3 bits (199), Expect = 5.800e-17
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   13 VWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 60
            +WNTA+G+EL T +GH NVVYAIAFNNP+G+KI TGSFDKT KLW+A+
Sbjct:    1 MWNTASGEELHTFNGHTNVVYAIAFNNPFGDKIATGSFDKTYKLWSAD 48          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A8C6LUL5_NOTFU (Dynein assembly factor with WD repeats 1 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LUL5_NOTFU)

HSP 1 Score: 80.9 bits (198), Expect = 8.640e-17
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0
Query:   14 WNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 60
            W+TA+G EL  L+GHRNVVYA+ FNNP+G+KI TGSFDKTC+LW AE
Sbjct:    8 WDTASGKELHILEGHRNVVYAVTFNNPYGDKIATGSFDKTCRLWCAE 54          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A672R9L4_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672R9L4_SINGR)

HSP 1 Score: 80.5 bits (197), Expect = 1.410e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    8 NRLKQVWNTATGDELLTLDGHRNVVYAIAFNNPWGN--------------KIITGSFDKTCKLWNAE 60
            +R  ++W+TA+G+EL TL+GHRNVVYAIAFNNP+G               K+ TGSFDKTCKLW+AE
Sbjct:  113 DRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGMAYPSSFPCFFGNWYKVATGSFDKTCKLWSAE 179          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A672R8A6_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672R8A6_SINGR)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    8 NRLKQVWNTATGDELLTLDGHRNVVYAIAFNNPWGN--------------KIITGSFDKTCKLWNAE 60
            +R  ++W+TA+G+EL TL+GHRNVVYAIAFNNP+G               K+ TGSFDKTCKLW+AE
Sbjct:  104 DRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGMAYPSSFPCFFGNWYKVATGSFDKTCKLWSAE 170          
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A674JMV1_TERCA (Dynein assembly factor with WD repeats 1 n=3 Tax=Testudines TaxID=8459 RepID=A0A674JMV1_TERCA)

HSP 1 Score: 75.5 bits (184), Expect = 9.890e-15
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0
Query:   12 QVWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKT 53
            ++W+TA+G+EL TL+GHRNVVYAIAFNNP+G+KI TGSFDKT
Sbjct:    6 KIWDTASGEELRTLEGHRNVVYAIAFNNPYGDKIATGSFDKT 47          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB06_ECTSI2.740e-2694.00WD repeat protein n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A812TQF9_SYMMI8.730e-2389.36DAW1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
Q9D4T2_MOUSE2.160e-1978.72Uncharacterized protein n=1 Tax=Mus musculus TaxID... [more]
A0A669DGY0_ORENI1.180e-1879.17Uncharacterized protein n=4 Tax=Percomorphaceae Ta... [more]
A0A2K6F3V9_PROCO1.310e-1876.60Dynein assembly factor with WD repeats 1 n=1 Tax=P... [more]
A0A812AXW2_SEPPH5.800e-1772.92DAW1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
A0A8C6LUL5_NOTFU8.640e-1772.34Dynein assembly factor with WD repeats 1 n=1 Tax=N... [more]
A0A672R9L4_SINGR1.410e-1656.72Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A672R8A6_SINGR1.900e-1656.72Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A674JMV1_TERCA9.890e-1576.19Dynein assembly factor with WD repeats 1 n=3 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 18..58
e-value: 5.9E-7
score: 39.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 20..58
e-value: 2.3E-6
score: 28.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 25..60
score: 13.75
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 9..60
e-value: 1.6E-14
score: 55.8
NoneNo IPR availablePANTHERPTHR44156FAMILY NOT NAMEDcoord: 9..60
NoneNo IPR availablePANTHERPTHR44156:SF1DYNEIN ASSEMBLY FACTOR WITH WDR REPEAT DOMAINS 1coord: 9..60
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 45..59
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..60
score: 14.635
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180310contigH-elongata_contig180310:990..1169 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180310.4797.1mRNA_H-elongata_contig180310.4797.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig180310 990..1169 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig180310.4797.1 ID=prot_H-elongata_contig180310.4797.1|Name=mRNA_H-elongata_contig180310.4797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
HAIHPPSNRLKQVWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSF
DKTCKLWNAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf