prot_H-elongata_contig180132.4791.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig180132.4791.1
Unique Nameprot_H-elongata_contig180132.4791.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
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BLAST of mRNA_H-elongata_contig180132.4791.1 vs. uniprot
Match: A0A0W8DA93_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DA93_PHYNI)

HSP 1 Score: 68.9 bits (167), Expect = 3.730e-12
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 
Query:    1 VWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERIAAL 42
            VWYNVGTLYD+CNQT+DA DAY KAAELGA   FI ER+  L
Sbjct:  133 VWYNVGTLYDTCNQTSDARDAYQKAAELGADAQFIRERLELL 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180132.4791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0W8DA93_PHYNI3.730e-1273.81Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..32
score: 9.092

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180132contigH-elongata_contig180132:862..1047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180132.4791.1mRNA_H-elongata_contig180132.4791.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig180132 862..1047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig180132.4791.1 ID=prot_H-elongata_contig180132.4791.1|Name=mRNA_H-elongata_contig180132.4791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
VWYNVGTLYDSCNQTTDALDAYNKAAELGASGGFIHERIAALMKKMNSGG
GSGGGGGGGGPG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom