prot_H-elongata_contig179955.4784.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig179955.4784.1
Unique Nameprot_H-elongata_contig179955.4784.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.070e-24
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = 0
Query:    1 MSICFLVCFVGFYKALRGAM--GSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 81
            +SI FLV F+ FYK LRG +   +    +FAH FPL+LL YM + F+ PW ERK LL VLWT IISP GQVRFLEGYVGDILT
Sbjct:  471 LSIAFLVSFICFYKCLRGVLLNPTWVPIQFAHTFPLLLLFYMLLCFLTPWHERKGLLRVLWTTIISPFGQVRFLEGYVGDILT 553          
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.080e-24
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = 0
Query:    1 MSICFLVCFVGFYKALRGAM--GSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 81
            +SI FLV F+ FYK LRG +   +    +FAH FPL+LL YM + F+ PW ERK LL VLWT IISP GQVRFLEGYVGDILT
Sbjct:  566 LSIAFLVSFICFYKCLRGVLLNPTWVPIQFAHTFPLLLLFYMLLCFLTPWHERKGLLRVLWTTIISPFGQVRFLEGYVGDILT 648          
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A7S3YFX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFX7_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.980e-15
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    6 LVCFVGFYKALRGAMGSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 81
            +  FV FYKALRG          AH+FPL+LL+YMA   VFPW+ER+S+   ++  + +P  QV F EGYVGD+LT
Sbjct:    1 MASFVCFYKALRGVFLRGVPPAAAHLFPLLLLLYMAQRMVFPWRERRSMWVNIYNTVAAPCAQVHFKEGYVGDVLT 76          
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A7S2XUU5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.370e-15
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    1 MSICFLVCFVGFYKALRGAMGSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 81
            +S  +LVCF+ +YKALRG   +    + AH FP +LL+Y+A    FPW +R+ +   +W  + +P   V F EGY GD+LT
Sbjct:  221 LSTAWLVCFLCYYKALRGCFTNHVPPQLAHAFPFLLLIYIAHRATFPWPKRRGMWVTVWNTVKAPFAPVHFKEGYAGDVLT 301          
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Match: A0A6H5KJN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.190e-11
Identity = 36/83 (43.37%), Postives = 43/83 (51.81%), Query Frame = 0
Query:    5 FLVCFVGFYKALRGA------MGSLFREEFAHVFPLVLLVYMAIAFVFPWKERKSLLYVLWTVIISPLGQVRFLEGYVGDILT 81
            FLV  + FYK LRG       M  L++                     PW ER+ LL VLWT IISP G+V+F +GYVGDILT
Sbjct:    3 FLVSLICFYKCLRGVLLNPTWMAILYKRGGKKARKT------------PWHERRGLLRVLWTTIISPFGKVQFFQGYVGDILT 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179955.4784.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KJQ4_9PHAE4.070e-2463.86EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LHJ2_ECTSI4.080e-2463.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YFX7_HETAK1.980e-1550.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XUU5_9STRA3.370e-1541.98Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6H5KJN6_9PHAE4.190e-1143.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004342EXS, C-terminalPFAMPF03124EXScoord: 4..81
e-value: 2.6E-8
score: 33.6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..81
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..27
NoneNo IPR availableTMHMMTMhelixcoord: 29..48
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 55..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179955contigH-elongata_contig179955:121..964 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179955.4784.1mRNA_H-elongata_contig179955.4784.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig179955 121..964 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig179955.4784.1 ID=prot_H-elongata_contig179955.4784.1|Name=mRNA_H-elongata_contig179955.4784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MSICFLVCFVGFYKALRGAMGSLFREEFAHVFPLVLLVYMAIAFVFPWKE
RKSLLYVLWTVIISPLGQVRFLEGYVGDILT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004342EXS_C