prot_H-elongata_contig179807.4777.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig179807.4777.1
Unique Nameprot_H-elongata_contig179807.4777.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length99
Homology
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BLAST of mRNA_H-elongata_contig179807.4777.1 vs. uniprot
Match: D8LBI6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI6_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 7.220e-40
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 0 
Query:    1 ELSRSDVKVDVTAHMLKLSLRNQTVISGPLFEQVDPEGCTWQIDNSSTGQPKEITITLLKARPATSKEQWWRVPLKGLESRAPVGRPSQPADPELVR 97
            ++SRSDVKV+VT  MLKLSLRNQ VI+G LF+ VDPEGCTWQIDN   GQPKE+TITLLKA PA S+E WWR PLKGLE+R P  +P   ADPE+VR
Sbjct:   99 DVSRSDVKVEVTGSMLKLSLRNQPVIAGNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPAPKP---ADPEMVR 192
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BLAST of mRNA_H-elongata_contig179807.4777.1 vs. uniprot
Match: A0A6H5JLQ0_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.430e-37
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 0 
Query:    1 ELSRSDVKVDVTAHMLKLSLRNQTVISGPLFEQVDPEGCTWQIDNSSTGQPKEITITLLKARPATSKEQWWRVPLKGLESRAPVGRPSQPADPELVR 97
            +++RSDVKV+VT  MLKLSLRNQ VI+G LF+ VDPEGCTWQID+   GQPKE+TITLLKA PA S+E WWR PLKGLE+R P  +P   ADPE+VR
Sbjct:  201 KVARSDVKVEVTGTMLKLSLRNQPVIAGNLFKPVDPEGCTWQIDDPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPAPKP---ADPEMVR 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179807.4777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI6_ECTSI7.220e-4071.13CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JLQ0_9PHAE1.430e-3769.07CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 3..60
e-value: 6.6E-7
score: 30.3
IPR007052CS domainPROSITEPS51203CScoord: 1..75
score: 11.741
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 1..81
e-value: 1.2E-12
score: 49.8
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 3..77
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 4..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179807contigH-elongata_contig179807:274..1228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179807.4777.1mRNA_H-elongata_contig179807.4777.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig179807 274..1228 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig179807.4777.1 ID=prot_H-elongata_contig179807.4777.1|Name=mRNA_H-elongata_contig179807.4777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
ELSRSDVKVDVTAHMLKLSLRNQTVISGPLFEQVDPEGCTWQIDNSSTGQ
PKEITITLLKARPATSKEQWWRVPLKGLESRAPVGRPSQPADPELVRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007052CS_dom
IPR008978HSP20-like_chaperone
IPR037898NudC_fam