prot_H-elongata_contig179656.4768.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig179656.4768.1
Unique Nameprot_H-elongata_contig179656.4768.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length104
Homology
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BLAST of mRNA_H-elongata_contig179656.4768.1 vs. uniprot
Match: D7FKX3_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.650e-28
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 0 
Query:    1 MSSSNEGRIHIINALFSTVKIPDALFR----DLDMAGARPCSLLLQRAIRHQQDHEWERCEEVAFKAREFAWEQLHSGSSWQAVAQVHRDAYGMAGLLLAAAMFLTDD 104
            M S  E R  +I+ L S  +I  ALF+    +L+  G+RPCSLL+QRAI+H ++  W RC EVA KARE+AWEQLHSG SWQ VA+VHRDAYG++G L+A A +++ +
Sbjct:   11 MESDTEKRSRVIDELLSDRQISTALFQCIALELEEVGSRPCSLLVQRAIQHLEEGRWTRCHEVALKAREYAWEQLHSGKSWQTVAKVHRDAYGVSGTLVAIATYISGE 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179656.4768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKX3_ECTSI1.650e-2853.70JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179656contigH-elongata_contig179656:226..1161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179656.4768.1mRNA_H-elongata_contig179656.4768.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig179656 193..1161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig179656.4768.1 ID=prot_H-elongata_contig179656.4768.1|Name=mRNA_H-elongata_contig179656.4768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSSSNEGRIHIINALFSTVKIPDALFRDLDMAGARPCSLLLQRAIRHQQD
HEWERCEEVAFKAREFAWEQLHSGSSWQAVAQVHRDAYGMAGLLLAAAMF
LTDD
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