prot_H-elongata_contig178975.4730.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig178975.4730.1
Unique Nameprot_H-elongata_contig178975.4730.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length148
Homology
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.060e-24
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = 0
Query:    1 MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTT----------------QNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSA 124
            M+ +LLKGS  G L+ GD ++    +  +   V   WK YN +KEAG   PDL NKR  N+G+  +DI  L++ L +I +KNRTT                 NL  L L +  R+LKP L+D+ KA RLAWALRWVR SA
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSA 140          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.220e-6
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 0
Query:    1 MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQ----------------NLKKLDLHA-SHRYLKPFLTDNSK 109
            +I  LL GS  G L  G  ++A +K       +  +W RY+ Q +AG+A P + N+R  N+GR  + +  L+++  +I +  RTTQ                NLK L L A S+  +KP+L   S+
Sbjct:   24 VIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAHSNALIKPYLQPASQ 149          
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR)

HSP 1 Score: 53.5 bits (127), Expect = 1.870e-5
Identity = 45/157 (28.66%), Postives = 73/157 (46.50%), Query Frame = 0
Query:    5 LLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAVPDLRNKRHKNAGRTCVDI-------LALRQ--------KLLEISIKNRTTQNLKKLDLHASHRYLKPFLTDNSKAARLAWALRWVRQSANGTRV-FDDMKRVVMVDEKWFY 145
            LLK    GKL+KG   + A+  D S   V  +W        A   +P+L  K  K  GR  + +       +  R+        K L++S K+   + +K+  L      +KP+L+ +SK ARL + L  + +    ++  FD+M   + +DEKWFY
Sbjct:  108 LLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKIQVNLEDIKDIPFRRRTNIRSLAKALDVS-KSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWFY 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178975.4730.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LD91_9PHAE1.060e-2443.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE8.220e-631.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P6TEQ3_COFAR1.870e-528.66uncharacterized protein LOC113700698 n=2 Tax=Coffe... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47169:SF1coord: 5..146
NoneNo IPR availablePANTHERPTHR47169FAMILY NOT NAMEDcoord: 5..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178975contigH-elongata_contig178975:575..1066 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178975.4730.1mRNA_H-elongata_contig178975.4730.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig178975 545..1066 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig178975.4730.1 ID=prot_H-elongata_contig178975.4730.1|Name=mRNA_H-elongata_contig178975.4730.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MIDDLLKGSTRGKLAKGDTQKAAQKHDCSRYQVWAVWKRYNAQKEAGIAV
PDLRNKRHKNAGRTCVDILALRQKLLEISIKNRTTQNLKKLDLHASHRYL
KPFLTDNSKAARLAWALRWVRQSANGTRVFDDMKRVVMVDEKWFYKY*
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