prot_H-elongata_contig17869.4718.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17869.4718.1
Unique Nameprot_H-elongata_contig17869.4718.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 95.1 bits (235), Expect = 2.870e-20
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRWNRLL 122
            K  N V   WV   KT++ G V+K  +R+VA+  SQ  G D+LE FAP      ++ ++ +AV N+WE+   DV  A++   L  ++YM+  +G  D SGRI  L+  +YGL+QSGR WNR L
Sbjct:  946 KDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKL 1068          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 3.550e-20
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRWNRLL 122
            K  N V   WV   KT++ G V+K  +R+VA+  SQ  G D+LE FAP      ++ ++ +AV N+WE+   DV  A++   L  ++YM+  +G  D SG +  L   +YGL+QSG +WNR L
Sbjct:   11 KDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKL 133          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A5E4GDR6_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDR6_PRUDU)

HSP 1 Score: 93.6 bits (231), Expect = 5.540e-20
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 0
Query:    3 TNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGDS---GRIVLLQSAVYGLRQSGRRWNRLLT 123
            TNIV   W+   K +  G + +  +R+VA+  SQEYG DY E F+P    + V+L++G+AV   WELR  DV  AF+   L  DV+MK  QG  DS     +  LQ ++YGL+Q+ R WN   T
Sbjct:  143 TNIVGCKWIFKIKKNADGTISRYKARLVAQGFSQEYGLDYEETFSPVVRHTTVRLILGLAVNFQWELRQLDVKNAFLHGELQEDVFMKQPQGFVDSQYPNHVCKLQKSLYGLKQAPRAWNAKFT 266          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-19
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 0
Query:    2 GTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGR 116
            G   +   WV SWKT+E G ++   +RMVAR  S+  G D+    + +   + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR
Sbjct:   41 GRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSGR 156          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.750e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 118
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  253 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 371          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.760e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 118
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  498 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 616          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 118
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  399 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 517          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5JI89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI89_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 118
            +G   +   WV SWKT+E G ++   +RMVAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:  567 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 685          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.230e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 118
            +G   +   WV SWKT+E G ++   +RMVAR+ SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  + Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:   56 EGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREW 174          
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.910e-19
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 118
            +G   +   WV SWKT+E G +L   +R+VAR  SQ  G D+    +     + +K V+ VA E   +L ++DV +A+I   L  ++Y++F +GCG  SG++V ++ A+YGL+QSGR W
Sbjct:   56 EGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GYH9_9APHY2.870e-2041.46Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401GXA0_9APHY3.550e-2039.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4GDR6_PRUDU5.540e-2041.94PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A6H5LAZ3_9PHAE1.100e-1937.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.750e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.760e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.810e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI89_9PHAE1.810e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1G1_9PHAE2.230e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE2.910e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 6..123
e-value: 9.7E-19
score: 68.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..123
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17869contigH-elongata_contig17869:368..739 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17869.4718.1mRNA_H-elongata_contig17869.4718.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17869 368..739 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17869.4718.1 ID=prot_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTS
LTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGDSGR
IVLLQSAVYGLRQSGRRWNRLLTK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like