prot_H-elongata_contig17818.4696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17818.4696.1
Unique Nameprot_H-elongata_contig17818.4696.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.150e-35
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0
Query:    1 MVKWKKLTAGMSVLTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEERE 71
            M KWKK+TAGM VL+L VT  V+ATEEHHH+DEDAP+PSYM+IRNKP PW CA C+LLDS CF KCK ERE
Sbjct:   36 MAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAERE 106          
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: A0A4D9D930_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D930_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.540e-15
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 0
Query:    3 KWKKLTAGMSVLTLIVTGY-VIATEEHHHKDE-DAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEER 70
            KW+K++   + + ++++G  +++   H H +  D P+P YM IR+KPFPW C+ CSL D+ CF+KCK ER
Sbjct:   36 KWRKISIVATGVVILMSGRELLSLSSHGHGEHSDKPLPDYMHIRSKPFPWECSDCSLFDTDCFKKCKAER 105          
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: A0A7S4EH99_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH99_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.760e-13
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0
Query:   23 IATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEER 70
            +A EEHHH+  D P+P YM IR+K FPW C  C L D  C++KC+EE+
Sbjct:   58 LAIEEHHHRP-DGPLPEYMSIRSKEFPWECDQCPLFDLNCWKKCREEQ 104          
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: B7G1T6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1T6_PHATC)

HSP 1 Score: 65.9 bits (159), Expect = 5.960e-12
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0
Query:    3 KWKKLTAGMSV-LTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEERE 71
            +W  +T  +++ + ++   Y    EEH H+ E+  VP +M IR K FPW C  C L DSKC++KC+ E+E
Sbjct:   71 RWVNITFWVAIPICVLSAAYTFFFEEHGHRIEEN-VPEFMGIRTKEFPWECGECDLFDSKCWKKCRAEKE 139          
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: B8BXS5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXS5_THAPS)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 25/72 (34.72%), Postives = 45/72 (62.50%), Query Frame = 0
Query:    3 KWKKLTAGMS----VLTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEER 70
            KW K++A ++    VL+++   +++   +H H+    P+P YM I+ K FPW C  C+L D +C++KC+ E+
Sbjct:   71 KWVKISAVVATPVCVLSVLKDIFLV---DHVHRPH-GPLPDYMNIQVKEFPWECETCALFDLECWKKCRAEQ 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHU0_ECTSI3.150e-3574.65Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A4D9D930_9STRA1.540e-1542.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4EH99_9STRA9.760e-1354.17Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B7G1T6_PHATC5.960e-1240.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8BXS5_THAPS1.320e-734.72Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10coord: 1..58
e-value: 4.7E-8
score: 35.0
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 3..51
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 3..71
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 3..71
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..73
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17818contigH-elongata_contig17818:224..1590 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17818.4696.1mRNA_H-elongata_contig17818.4696.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17818 218..2900 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17818.4696.1 ID=prot_H-elongata_contig17818.4696.1|Name=mRNA_H-elongata_contig17818.4696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MVKWKKLTAGMSVLTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPW
TCAGCSLLDSKCFQKCKEEREMK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a