prot_H-elongata_contig17719.4647.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17719.4647.1
Unique Nameprot_H-elongata_contig17719.4647.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length763
Homology
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BLAST of mRNA_H-elongata_contig17719.4647.1 vs. uniprot
Match: D8LPZ3_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ3_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.920e-28
Identity = 91/208 (43.75%), Postives = 118/208 (56.73%), Query Frame = 0 
Query:    1 VCSTWKRHRKAIVSAAKAAAVGAEVVGPTIT---EGLPERRQ-----GAGAGQRRDGGRLRGVHYHSTKDGKMRELLRSLGLPAVGDKAAMVARHKRLVLLDAASNDREAPLPRSELIRQVLSWERERKHEKAAAAAASRNLLPRPSSSLSSPAVLPERVRLAQELPGDGEGGEGGDKEDPQPIEK----IPKSMQDGFKALIARAKA 196
            +C+TWK +R+AI++AA A+A              +  P  R+     GAG G+  DGG ++ VHYHS  D KM+ LL  +GLP  G KAAMVARHKRLVLL AASNDRE PLP+++L+RQV +WERE+  E+ A A  +R  L   S S  S     + +R A      G GG           E     I K M+DGF ALIA A++
Sbjct:   11 ICTTWKHNRRAILAAANASAXXXXXXXXXXXXREQPAPSGRRKVCAIGAGQGRVGDGGVVKAVHYHSLNDSKMKALLIRVGLPVGGGKAAMVARHKRLVLLSAASNDREVPLPKAQLLRQVAAWEREKDKERMANAKTARAGLV--SGSAGSGGGSRQALRPA------GTGGXXXXXXXXXXPESEKIVISKEMKDGFSALIASARS 210
[Close]
BLAST of mRNA_H-elongata_contig17719.4647.1 vs. uniprot
Match: A0A6H5JRB6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-13
Identity = 76/221 (34.39%), Postives = 107/221 (48.42%), Query Frame = 0 
Query:  307 DKTRILGVAGRMVRT--PWRCVFSAGKQITSDLRKSR--GTADATS--GIRDEIRPDCPDMKADDCPGDARVGVAEERVDISALPSS------RDAADVRDDVSGAMGDGQTPTMTKLGEIETVSNKSEMDEIVRGAA--GKCG--DIDDERDDDDGFARGADLVAPEGL--GLIYLNSTTGETARDPPPELVARAEEAEEAGEYLVFIPSRVFLASVMNA 509
            D   ILGVAGR+VRT  PWRC+FS G+Q ++ + + R  GTA+A +  G+                 G  R     +     AL S+      R+     + V  + G G     T  G+  + S  ++   +V  AA  G+ G     + RD   G    A  V   G   G +YLN+ T ET R+PP ELVA A++AE AG+YLVF+PS  F+A+   A
Sbjct:  267 DAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAAGVMXXXXXXXXXXXXXXAAGVMRRTEGCKSAGERALRSAGGYGVERNGGCASNGVGESNGSGVGAAATVGGDGRSGSKTTQELSVVAAAAEDGRAGFGGSGEGRDRGGGQEEAARPVREPGADQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGA 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17719.4647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPZ3_ECTSI1.920e-2843.75SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRB6_9PHAE1.220e-1334.39RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 701..725
e-value: 7.8E-6
score: 35.4
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 703..722
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 699..728
score: 9.653
NoneNo IPR availableGENE3D4.10.1060.10coord: 697..735
e-value: 6.4E-7
score: 30.4
NoneNo IPR availablePANTHERPTHR14134:SF2E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 51..206
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 51..206
IPR003034SAP domainPROSITEPS50800SAPcoord: 57..91
score: 8.907

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17719contigH-elongata_contig17719:355..4698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17719.4647.1mRNA_H-elongata_contig17719.4647.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17719 355..4700 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17719.4647.1 ID=prot_H-elongata_contig17719.4647.1|Name=mRNA_H-elongata_contig17719.4647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=763bp
VCSTWKRHRKAIVSAAKAAAVGAEVVGPTITEGLPERRQGAGAGQRRDGG
RLRGVHYHSTKDGKMRELLRSLGLPAVGDKAAMVARHKRLVLLDAASNDR
EAPLPRSELIRQVLSWERERKHEKAAAAAASRNLLPRPSSSLSSPAVLPE
RVRLAQELPGDGEGGEGGDKEDPQPIEKIPKSMQDGFKALIARAKAAQKR
KASCSSVPGTDDSVSKRPRFSQGLDRGGDDRGARGTAQKNDTVANGVSPG
RPADMELSGSFMSPLSVDGTVGDGSITTTPPTGPSWQARKSLDIPGSSST
GVVVGTDKTRILGVAGRMVRTPWRCVFSAGKQITSDLRKSRGTADATSGI
RDEIRPDCPDMKADDCPGDARVGVAEERVDISALPSSRDAADVRDDVSGA
MGDGQTPTMTKLGEIETVSNKSEMDEIVRGAAGKCGDIDDERDDDDGFAR
GADLVAPEGLGLIYLNSTTGETARDPPPELVARAEEAEEAGEYLVFIPSR
VFLASVMNAQFSAPSLTVTPSMTEASERATLVVDATAEANRGRESAHRRI
AVGLMHDQGRALTTPEPLAAADAGYGRIAGQGVDAWDRLLAASQGGTPLS
QPLAAMSADPDWSATASTDAHSATANPALGHSVAKKSSMSKACVTSPLTI
DLSQRLSKLSPTIVGDGKTRDGVDVSASAGKTPGFVEITGADGTGPGQTQ
GKWACTVCTLENRERARVCAACLTPKANPSESKNGSRLRLPTRRNRGDNA
SQSVITSFASRSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR039577Rad18
IPR003034SAP_dom