prot_H-elongata_contig176126.4603.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig176126.4603.1
Unique Nameprot_H-elongata_contig176126.4603.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
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BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Match: D7FY25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY25_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.180e-10
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    3 LLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQT--VVSKKGET 43
            L VT DS+VLVS SEDG VRSWHVASRQCVQ+T  VV  KGET
Sbjct:  318 LSVTADSSVLVSSSEDGTVRSWHVASRQCVQKTEGVVGGKGET 360
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BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Match: A0A6H5JBW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.270e-9
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    3 LLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQT--VVSKKG 41
            L VT DS+VLVS SEDG VRSWHVASRQCVQ+T  VV  KG
Sbjct:  249 LSVTADSSVLVSSSEDGTVRSWHVASRQCVQKTEGVVGGKG 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176126.4603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY25_ECTSI3.180e-1076.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW7_9PHAE7.270e-975.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..46
e-value: 1.2E-6
score: 29.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..34
score: 10.241
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..34
score: 9.942
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176126contigH-elongata_contig176126:983..1129 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176126.4603.1mRNA_H-elongata_contig176126.4603.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig176126 965..1129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig176126.4603.1 ID=prot_H-elongata_contig176126.4603.1|Name=mRNA_H-elongata_contig176126.4603.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MCLLVTRDSAVLVSGSEDGVVRSWHVASRQCVQQTVVSKKGETREKGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf