prot_H-elongata_contig17203.4438.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17203.4438.1
Unique Nameprot_H-elongata_contig17203.4438.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length152
Homology
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BLAST of mRNA_H-elongata_contig17203.4438.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.780e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 0 
Query:   99 EGVASVENTFQSLAVVFGETLKPLGRGATRKQMELVWTGRMRHYNALIQAQQ 150
            +G ASVE TFQSLA  FGETL P+ RGATR++ E VWTGR+RH++A IQAQQ
Sbjct: 1069 QGAASVERTFQSLAAAFGETLVPVDRGATREEREAVWTGRVRHFHARIQAQQ 1120
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BLAST of mRNA_H-elongata_contig17203.4438.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.870e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:   99 EGVASVENTFQSLAVVFGETLKPLGRGATRKQMELVWTGRMRHYNALIQAQQ 150
            +G ASVE TFQSLA  FGETL P+ R ATR++ E VWTGR+RH++A IQAQQ
Sbjct:  198 QGAASVERTFQSLAAAFGETLVPVDRAATREEREAVWTGRVRHFHARIQAQQ 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17203.4438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI7.780e-1369.23Essential abundant protein involved in regulation ... [more]
A0A6H5J4R7_9PHAE4.870e-1267.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17203contigH-elongata_contig17203:3165..3620 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17203.4438.1mRNA_H-elongata_contig17203.4438.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17203 3165..3620 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17203.4438.1 ID=prot_H-elongata_contig17203.4438.1|Name=mRNA_H-elongata_contig17203.4438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
PAKGEDNTTDNQETPAAAAADNEKSGPSRAPPSRGKRKRSKPENTTKATA
ADAVAAAPASRTSRRSSRRPEAKVVAPPGGKANTEAKQKIEAKATKESEG
VASVENTFQSLAVVFGETLKPLGRGATRKQMELVWTGRMRHYNALIQAQQ
V*
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