prot_H-elongata_contig171528.4407.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig171528.4407.1
Unique Name	prot_H-elongata_contig171528.4407.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	95

Homology

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A6H5KRX4_9PHAE (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRX4_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.070e-53
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 92
            LALCANDNRLQIY+GCNSP+F++WRL HVLEEHDL+I+GISWSP++NKIVTCSHDRNAFVWSYDAAQ KWNPILCAL L RAALDV WSPSG
Sbjct:   27 LALCANDNRLQIYEGCNSPSFASWRLAHVLEEHDLVISGISWSPVTNKIVTCSHDRNAFVWSYDAAQAKWNPILCALMLTRAALDVHWSPSG 118

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A836CE76_9STRA (Actin-related protein 2/3 complex subunit ARPC1B or p41-Arc n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE76_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.170e-38
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 92
            LALC N+N L IY+GCNS + ++WR  HVL EHD++I+GISWS  +NKIVTCSHDRNAFVW +DAA  +W P LC L+++RAAL V+WSP G
Sbjct:   26 LALCPNNNELHIYEGCNSADMASWRRAHVLAEHDMIISGISWSHANNKIVTCSHDRNAFVWKFDAAANRWVPTLCVLRIDRAALSVEWSPDG 117

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A0W8CZ58_PHYNI (Fatty acid synthase subunit beta n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ58_PHYNI)

HSP 1 Score: 124 bits (312), Expect = 2.140e-33
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 95
            LA+C N N + IY GC++P+ S WR   VL EHD+L+ G+ WSP+ +++V+CSHDR+AFVW Y+AA  +W P+L  L++ RAA +VKWSP GK +
Sbjct:   28 LAICPNSNEIWIYSGCHAPDPSQWRKEAVLTEHDMLVCGLDWSPVHDQLVSCSHDRSAFVWKYEAAYRQWKPLLVVLRITRAATNVKWSPDGKKF 122

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A3M6V8F1_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8F1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.380e-33
Identity = 49/95 (51.58%), Postives = 73/95 (76.84%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 95
            LA+C N N + IY GC++P+ S WR   VL EHD+L++G+ WSP+ +++V+CSHDR+AFVW Y+A+  +W P+L  L++ RAA++VKWSP GK +
Sbjct:   29 LAICPNSNEIWIYSGCHAPDPSQWRKEAVLTEHDMLVSGLDWSPVHDQLVSCSHDRSAFVWKYEASYRQWKPLLVVLRVTRAAINVKWSPDGKKF 123

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: D0P410_PHYIT (Actin-related protein 2/3 complex subunit n=25 Tax=Peronosporaceae TaxID=4777 RepID=D0P410_PHYIT)

HSP 1 Score: 126 bits (317), Expect = 5.990e-33
Identity = 51/95 (53.68%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 95
            LA+C N N + IY GC++PN S WR   VL EHD+L+ G+ WSP+ +++V+CSHDR+AFVW Y+AA  +W P+L  L++ RAA +VKWSP GK +
Sbjct:   27 LAICPNSNEIWIYSGCHAPNPSQWRKEAVLTEHDMLVCGLDWSPVHDQLVSCSHDRSAFVWKYEAAYRQWKPLLVVLRITRAATNVKWSPDGKKF 121

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A067BR35_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BR35_SAPPC)

HSP 1 Score: 119 bits (298), Expect = 8.230e-33
Identity = 45/95 (47.37%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 95
            +A+C N N + IY  C++P+ + WR   +L EHD++++G+ WSP+ + IV+CSHDR+AFVW+Y+ ++ KW P L  L++ RAA++VKWSP GK +
Sbjct:   22 VAICPNTNEIWIYSNCHAPDVAQWRKEAILTEHDMVVSGLDWSPVHDMIVSCSHDRSAFVWNYNPSERKWKPSLVVLRITRAAINVKWSPDGKKF 116

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A662WKQ5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKQ5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 6.560e-32
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 92
            LA+C N N + IY GC+ P+ + WR   VL EHD+L+ G+ WSP+ +++V+CSHDR+AFVW Y+AA  +W P+L  L++ RAA++VKWSP G
Sbjct:   28 LAICPNSNEIWIYSGCHQPDATQWRKEAVLTEHDMLVCGLDWSPVHDQLVSCSHDRSAFVWKYEAAFRQWKPLLVVLRITRAAINVKWSPDG 119

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A8K1FHC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHC8_PYTOL)

HSP 1 Score: 122 bits (305), Expect = 3.450e-31
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSG 92
            +ALC N N + IY GC +P+ + WR   VL EHD++++G+ WSP+++ IV+CSHDR AFVW YD A  +W P L  L+++RAA++VKWSPSG
Sbjct:   28 VALCPNSNEIWIYSGCQNPDATKWRKEAVLTEHDMIVSGLDWSPVNDMIVSCSHDRGAFVWKYDPAFRQWKPSLVVLRISRAAINVKWSPSG 119

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: A0A1V9Z0K3_9STRA (Actin-related protein 2/3 complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z0K3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.880e-31
Identity = 48/95 (50.53%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 95
            +A+C N N + IY  C++P+ + WR   +L EHD+L++G+ WSP+ N IV+CSHDR+AFVW+Y+ A+ KW P L  L++ RAA++VKWSP GK +
Sbjct:   22 VAICPNTNEIWIYSNCHAPDVAQWRKEAILTEHDMLVSGLDWSPVHNMIVSCSHDRSAFVWNYEPAERKWKPSLVVLRITRAAINVKWSPDGKKF 116

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BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Match: F0W7K8_9STRA (Actinrelated protein 2/3 complex subunit putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K8_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.930e-31
Identity = 46/95 (48.42%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    1 LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIVTCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW 95
            +A+C N N + IY  C++ N + WR   +L EHD+++TG+ WSP+++ IV+CSHDR+A+VW YD+   KW P++  L++ RAA+DVKWSP+GK +
Sbjct:   53 VAVCPNTNEIWIYSNCHNVNVAKWRREAILTEHDMIVTGLDWSPVNDMIVSCSHDRSAYVWQYDSPTCKWKPLMVVLRITRAAIDVKWSPNGKKF 147

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot

BLAST of mRNA_H-elongata_contig171528.4407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KRX4_9PHAE	2.070e-53	85.87	ANAPC4_WD40 domain-containing protein n=2 Tax=Ecto...	[more]
A0A836CE76_9STRA	1.170e-38	64.13	Actin-related protein 2/3 complex subunit ARPC1B o...	[more]
A0A0W8CZ58_PHYNI	2.140e-33	52.63	Fatty acid synthase subunit beta n=1 Tax=Phytophth...	[more]
A0A3M6V8F1_9STRA	2.380e-33	51.58	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
D0P410_PHYIT	5.990e-33	53.68	Actin-related protein 2/3 complex subunit n=25 Tax...	[more]
A0A067BR35_SAPPC	8.230e-33	47.37	Uncharacterized protein (Fragment) n=1 Tax=Saprole...	[more]
A0A662WKQ5_9STRA	6.560e-32	52.17	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
A0A8K1FHC8_PYTOL	3.450e-31	53.26	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A1V9Z0K3_9STRA	5.880e-31	50.53	Actin-related protein 2/3 complex subunit n=1 Tax=...	[more]
F0W7K8_9STRA	5.930e-31	48.42	Actinrelated protein 2/3 complex subunit putative ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 23..62 e-value: 7.0E-7 score: 38.9
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 30..62 score: 10.275
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..95 e-value: 3.2E-31 score: 110.4
IPR017383	Actin-related protein 2/3 complex subunit 1	PANTHER	PTHR10709	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1	coord: 1..93
None	No IPR available	PANTHER	PTHR10709:SF2	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT	coord: 1..93
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..71 score: 10.627
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 1..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig171528	contig	H-elongata_contig171528:195..1118 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig171528.4407.1	mRNA_H-elongata_contig171528.4407.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig171528 195..1118 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig171528.4407.1 ID=prot_H-elongata_contig171528.4407.1|Name=mRNA_H-elongata_contig171528.4407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
LALCANDNRLQIYDGCNSPNFSTWRLVHVLEEHDLLITGISWSPLSNKIV
TCSHDRNAFVWSYDAAQGKWNPILCALKLNRAALDVKWSPSGKSW

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017383	ARPC1
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf