prot_H-elongata_contig17149.4405.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17149.4405.1
Unique Nameprot_H-elongata_contig17149.4405.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length830
Homology
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 573 bits (1478), Expect = 5.350e-189
Identity = 395/943 (41.89%), Postives = 490/943 (51.96%), Query Frame = 0
Query:    1 MDNLLPTVAAADVTSNEFRETNLPYQQWEASRTHFTPNTPSDIFHLLPPIAGRKERQEACGTL--PTSPRIGSQNPHPAPVDRNLSDLYDPSLDPSPIGMEKRGAVQPVRITRVLRHQEPRNREARSAQHL-GYSNKSSGSII---VLILNGYNTATRTSHMRG---------GERADEIQDDTG--VDVYLQSSHSIFFEHATLLPQQWICRTLQNGSLHANIPPYEGSTIPDCTS---EDNELSFGLTVFLAAADDWS-------ESDVVNDPCAWGNHPGFNASGNDLKSGSHSDENLLKASVE-KVTRYVFQAEDGTPGPSRNAFRLQFEPGPLGMELEEDPGRRGIVQIRSILQAGQADQDGRLFVGSLIVAVGGWGK-------RSSTTTGLNA--VELD--------------KQINDSGEWP-----VIVRSLAEFKTAALSRKSDQLFLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGNVLLMGNGDVPSRLARAISAREASRFVGME--IQGGPPGWEPGRSTGTREGGCSQEVRYD---------DDISSTACGPQVDRTP----ADILLNEGAGYRSNLKGSSLI-------------DENHSVQRPESG--SALGTWEFETGGGIFNENDEGLAARLEFSCGDRERAPG---------ERPVLPLGLEASAKDDFPVFILFCNNHGSAAMQVSWINYDGKCIPRRLLAPGACYFERSFATHPWVIQDIISTP----------DEYDLKEGASDVA-----------AHEKAKGNCCLVRLGDAMAVSRLAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDPNKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVGQNAG---EHPPGPGLGVGVPNLRFVMIG 824
            M+NLLP VA  DVTSN FRET+LPYQQWE  RTH TP TPS++ HLLPPI GRK R++  G+   P SP +    P PAPVDRN S LYDP+LDPSPIG E+RG VQPVRI+R++    PR      A  L G +  + G  I   V +LNG+    RT HMR             AD + +D    +DV+++   S   +H TLLP +  CR LQ+GS     PP   S IP+ +    +  E   GLTVFLA   +WS       + +  ++P      PG          G  SD +  K + E ++T  +FQ EDGTP PSRNAFR+QFEPGPLG+ELEE PG RGIV++R +LQAGQA+ DGRL  G LIVAVGGW +       R +T +G  A  V LD                  D G         I+RSLA+F+ A   R+ D+LF+ WA+DR APE V+ALG P       +P       SP S        G     G     S   R   A  + ++ G E  +  G PGWE   S           +  D         +  S  A G Q+        AD L     G    + GS  +              E  + +  E G  SA G WEFETGGGIF+++D+GLAAR          AP          + P  PLGLE+SA DD  VFI FCNNH SA M+VSWINYDG+ +PRR LAPGACYFERSFATHPWVI+   S             + + +E     A           A +      C+VRLGDAMA+++  GS IWNP GRT+S TKQ + GV   S     A G    +G GLDP  KR C+AG   EA   RA  ARAV R EK R+L+E++ WR HP GG G  AG       G  LG GVPNLR VM+G
Sbjct:    1 MENLLPVVAGIDVTSNHFRETSLPYQQWETKRTHHTPTTPSEVGHLLPPIGGRKPRRDESGSSLPPISPYVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRIV----PRQDSGLGALELQGAARSAEGPHIPTAVTVLNGH----RTQHMRDRTSAPAGDCASAADVLSEDEERCIDVFVEG-FSRGIDHETLLPSEMFCRALQHGSQG---PPKPSSLIPEDSRHYLDVREGYLGLTVFLARTSEWSGTIDGGVQGEKQDEPI----EPGI---------GDESDRDDRKLATETEITHMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDEASANGALRPNTASGAGAGHVALDGVDIYGNLDVPALRSSAMDGGSGAKSHESAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPR----GWSPASLYSRRRNEGGGRARGAFPPGSERQRPFEASTSPKWQGYEETVPAGAPGWETATSLARGRDSLGYSLSSDRPKLASSPRNQASHAAGGGQLQAXXXXREAD-LATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFGEGGARSAQG-WEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEHSDSNHYGNRSLHAGGQQEEKRESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMG 912          
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 500 bits (1287), Expect = 3.510e-160
Identity = 370/964 (38.38%), Postives = 460/964 (47.72%), Query Frame = 0
Query:   29 EASRTHFTPNTPSDIFHLLPPIAGRKERQEACGTL--PTSPRIGSQNPHPAPVDRNLSDLYDPSLDPSPIGMEKRGAVQPVRITRVLRHQEPRNREARSAQHLGYSNKSSGSI----IVLILNGYNTATRTSHMRG--GERADEIQ-----DDTGVDVYLQSSHSIFFEHATLLPQQWICRTLQNGSLHANIPPYEGSTIPDCTSEDN-------ELSFGLTVFLAAADDWSES------DVVNDPCAWGNHPGFNASGNDLKSGSHSDENLLKASVEKVTRYVFQAEDGTPGPSRNAFRLQFEPGPLGMELEEDPGRRGIVQIRSILQAGQADQDGRLFVGSLIVAVGGWGK-------RSSTTTG----------------LNAVELDKQINDSGEWP-----VIVRSLAEFKTAALSRKSDQLFLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGNVLLMGNGDVPSRLARAISAREASRFVGMEIQGGPPGWEPGRSTGTREGGCSQEVRYD-------------DDISSTACGPQVDR---------------TPADILLNEGAGYRSNLKGSSLIDENHSVQRPESGSALGT--WEFETGGGIFNENDEGLAAR---------LEFSCGDRERAPGERPVLPLGLEASAKDDFPVFILFCNNHGSAAMQV------------------------------------------SWINYDGKCIPRRLLAPGACYFERSFATHPWVIQDIISTPDEYDLKEGASDVAAH------EKAK-----------------------GNCCLVRLGDAMAVSRLAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDPNKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVGQNAG---EHPPGPGLGVGVPNLRFVMIGS 825
            +  RTH TP TPSD+ HLLPPI GRK R++  G+   P  P +    P PAPVDRN S LYDP+LDPSPIG E+RG VQPVRI+RV+    PR      AQ L    +S+  +    +V +LNGYNT  R        G+ A         +++ +DV+++   S   +H TLLP +  CR LQ+GS     PP   S I    SED+       E   GLTVFLA   +WS +          D C     PG               +  L A +  +TR +FQ EDGTP PSRNAFR+QFEPGPLG+ELEE PG RGIV++R +LQAGQA+ DGRL  G LIVAVGGW +       R ST +G                L+   L     D G         I+RSLA+F+ A   R+ D+LF+ WA+DR APE V+ALG P       +P       SP S        G   + G     S   R   A ++ +  G E     P    GR T T        +RY              +  S  A G Q+                 +P ++  +E      N  G    +      R   G A     WEFETGGGIF+++D+GLAAR         L  +    + A  + P  PLGLE+SA DD  VFI FCNNH SA M+V                                          SWI+YDG+ +PRR LAPGACYFERSFATHPWVIQ   S       + G++D + H      EK +                          C+VRLGD MAV++  GS IWNP GRT+S TKQ + GV   S     A G    EG GLDP  KR C+AG   EA   RA  ARAV R EK R+L+EI+ WR HP GG G  AG       G  LG GVPNLR VM+GS
Sbjct:   23 QTKRTHHTPTTPSDVGHLLPPIGGRKPRRDGSGSSLPPIPPCVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRVV----PRQDSGLGAQELQGEARSAEGLPIPTVVTVLNGYNTQHRRDRTSAPAGDYASATHVLSEDEESCIDVFVEG-FSRGVDHETLLPSEMFCRALQHGSQG---PPKPSSLI----SEDSRHYLDVREGYLGLTVFLARTSEWSGTIDGGVQGEKQDECI---EPGIG-------------DGKLAAEMA-ITRMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDESSANGTLRPSTASGAGTGHVVLDGVDIYGNLDVPALRSSAMDGGSGAEAHKSAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPR----GWSPASVYSRRRNEGRGRVRGTFPSGSERQRPFEASKSPKSQGYEES--EPEGALGRETTTILARSRDSLRYSLSSDRPKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSERLAAGINRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSDSN------QAGSNDRSLHAGGQQEEKCEPTGSGAPVPLKPSPPREAGDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS 945          
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.630e-32
Identity = 164/595 (27.56%), Postives = 239/595 (40.17%), Query Frame = 0
Query:  286 VFQAEDGTPGPSRNAFRLQFEPGPLGMELEEDPGRRGIV--------------------QIRSILQAGQADQDGRLFVGSLIVAVGGWGKRSSTTTGLNAVELDKQINDSGEWPVIVRSLAEFKTAALSRKSDQLFLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGNVLLMGNGDVPSRLARAISA--REASRFVGMEIQGGPPGWEPGRSTGTREGGCSQEVRYDDDISSTACGPQVDRTPADILLNEGAGYRSNLKGSSLIDENHSVQRPESGSALGTWEFETGGGIFNENDEGL--------------------AARLEFSCGDRERAPGERPV--------LPLGLEASAKDDFPVFILFCNNHGSAAMQVSWINYDGKCIPRRLLAPGACYFERSFATHPWVIQDIISTPDEYDLKEGASDVAAHEKAKGNCCLVRLG-DAMAVSR-LAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDPNKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVG-QNAGEHPPGPGLGVGVPNLRFVMIGSQR 827
            +F +EDGT    R+ +R+ F  GP+GMEL+ D   RG+V                    Q R +L+ GQA  +GR+  G LI+A GGW  R+S           +  N      V+VRSLA+F+  A+ R  D     + +D ++PE V A                      F E DAL   G     G      R A A++A  R A   +                   R    ++++   DD S+ + G   D + +     +G        G    +E+   +  E G+    W F TGGGI   +D  L                    AAR+  S G    A  + P         LPL + AS  D  PVF+ F N H +  ++V W++Y G+ +PRR+L PG  YFERSFA+HPW++Q +           G S   +  +    C  VR G DA+A    LA   +W+P  R++S   Q K                                  GS + A +           A K +IL+E+R  R    G +  + A  H    GL  G+P+LR VM+G+Q+
Sbjct:  238 LFPSEDGTIPIPRSVYRVDFAAGPMGMELQCD-AHRGLVSQCLMPTYLPVLLLIVIGRTQQRGVLRGGQAAANGRVRAGHLILAAGGW--RASA----------RPANR-----VVVRSLADFEGIAVGRDPDVPLSIFFLDPDSPEAVQA----------------------FWEEDALHCEG-----GYRAQRQRSAEAVAASMRRADSMI------------------VRRHARARDIMRSDDGSAASAGG-CDSSVSXXXXXDGNCGSXEAXGDGFNEEHE--EDAEQGNG---WGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVRRSEG-AVPASSQSPXXXXXXXLSLPLSMGASKADVAPVFLCFSNAHATMKLRVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQAM-----------GPSGTGSGSE----CVAVRCGADAVAAGAGLAFCAMWDPLRRSVSVMPQAK----------------------------------GSSSHARL----------MAAKHQILEEMRQHRSFDAGSLAFETASAH----GLSSGIPHLRVVMVGAQQ 699          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7E5_ECTSI5.350e-18941.89VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE3.510e-16038.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGW3_9STRA6.630e-3227.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024053von Hippel-Lindau disease tumour suppressor, beta domainPFAMPF01847VHLcoord: 608..665
e-value: 4.5E-6
score: 26.5
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyGENE3D2.60.40.780coord: 599..675
e-value: 1.0E-9
score: 40.4
IPR036208VHL superfamilySUPERFAMILY49468VHLcoord: 605..664
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 300..354

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17149contigH-elongata_contig17149:2452..5796 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17149.4405.1mRNA_H-elongata_contig17149.4405.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17149 2452..5796 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17149.4405.1 ID=prot_H-elongata_contig17149.4405.1|Name=mRNA_H-elongata_contig17149.4405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=830bp
MDNLLPTVAAADVTSNEFRETNLPYQQWEASRTHFTPNTPSDIFHLLPPI
AGRKERQEACGTLPTSPRIGSQNPHPAPVDRNLSDLYDPSLDPSPIGMEK
RGAVQPVRITRVLRHQEPRNREARSAQHLGYSNKSSGSIIVLILNGYNTA
TRTSHMRGGERADEIQDDTGVDVYLQSSHSIFFEHATLLPQQWICRTLQN
GSLHANIPPYEGSTIPDCTSEDNELSFGLTVFLAAADDWSESDVVNDPCA
WGNHPGFNASGNDLKSGSHSDENLLKASVEKVTRYVFQAEDGTPGPSRNA
FRLQFEPGPLGMELEEDPGRRGIVQIRSILQAGQADQDGRLFVGSLIVAV
GGWGKRSSTTTGLNAVELDKQINDSGEWPVIVRSLAEFKTAALSRKSDQL
FLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGN
VLLMGNGDVPSRLARAISAREASRFVGMEIQGGPPGWEPGRSTGTREGGC
SQEVRYDDDISSTACGPQVDRTPADILLNEGAGYRSNLKGSSLIDENHSV
QRPESGSALGTWEFETGGGIFNENDEGLAARLEFSCGDRERAPGERPVLP
LGLEASAKDDFPVFILFCNNHGSAAMQVSWINYDGKCIPRRLLAPGACYF
ERSFATHPWVIQDIISTPDEYDLKEGASDVAAHEKAKGNCCLVRLGDAMA
VSRLAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDP
NKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVGQ
NAGEHPPGPGLGVGVPNLRFVMIGSQRKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024053VHL_beta_dom
IPR037140VHL_beta_dom_sf
IPR036208VHL_sf
IPR036034PDZ_sf