prot_H-elongata_contig17147.4403.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17147.4403.1
Unique Nameprot_H-elongata_contig17147.4403.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length120
Homology
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.250e-17
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    4 GGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            GGA+SWFSR QK    +++E+EYVAL +++ E+ FLR    FM P + +  I I E N+GAI++ +N  S+  ++HVD++HH+VR  +E
Sbjct:  302 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVE 390          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.300e-17
Identity = 38/89 (42.70%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    4 GGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            GGA+SWFSR QK    +++E+EYVAL +++ E+ FLR I  FM P + +  I + E N+GAI++ +N  S+  ++H+D++HH +R  +E
Sbjct:  184 GGAVSWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVE 272          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5JNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.950e-16
Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = 0
Query:    5 GAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            G ++WFSR QK    +++E+EYVA+A++LNE+ FLR +  FM P   +  I + EGN+GAI++  N   +  ++H+D++HH +R  +E
Sbjct:  126 GCVTWFSRTQKCVTLSTTEAEYVAIADVLNEVLFLRQLWRFMLPDAGMPCIPVFEGNQGAIQIAHNPIVNSNSKHIDVRHHYIRGLVE 213          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.230e-16
Identity = 36/92 (39.13%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    1 MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            M  GG ++WFSR QK    +++E+EYVA+A++L E+ FLR +  FM P   +  I + E N+GAI+++ N  ++  ++H+D++HH +R  +E
Sbjct:  246 MCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVE 337          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.270e-16
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    1 MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            M  GG ++WFSR QK    +++E+EYVA+A++L E+ FLR +  FM P   +  I + E N+GAI++  N  ++  ++H+D++HH +R  +E
Sbjct:  191 MCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 282          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.320e-16
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    1 MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            M  GG ++WFSR QK    +++E+EYVA+A++L E+ FLR +  FM P   +  I + E N+GAI++  N  ++  ++H+D++HH +R  +E
Sbjct:  181 MCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 272          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.040e-15
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    1 MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            M  GG ++WFSR QK    +++E+EYVA+A++L E+ FLR +  FM P   +  I + E N+GAI++  N  ++  ++H+D++HH +R  +E
Sbjct:  308 MCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 399          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.300e-15
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 0
Query:    1 MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            M  GG ++WFSR QK    +++E+EYVA+A++L E+ FLR +  FM P   +  I + E N+GAI++  N  ++  ++H+D++HH +R  +E
Sbjct: 1342 MCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 1433          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-15
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 0
Query:    1 MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIE 91
            M  GG ++WFSR QK     ++ESEYVA+A++L E+ FLR +  FM P   +  I + E N+GAI++  N  ++  ++H+D++HH +R  +E
Sbjct:  698 MCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVE 789          
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.770e-15
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 0
Query:    4 GGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPIDV-AIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVR 87
            GGA+SWFSR QK    +++E+EYVAL +++N++ FL  I  FM P + +  I + E N+GAI++V+N  S+  ++H+D+ HH +R
Sbjct: 1205 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNPISNSNSKHIDVWHHFLR 1289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17147.4403.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8D6_9PHAE2.250e-1744.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X8_9PHAE4.300e-1742.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNU8_9PHAE2.950e-1640.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE4.230e-1639.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE5.270e-1639.13Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE5.320e-1639.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE1.040e-1539.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.300e-1539.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KQN5_9PHAE1.720e-1540.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6V8_9PHAE1.770e-1543.53Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..89
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 4..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17147contigH-elongata_contig17147:3900..4259 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17147.4403.1mRNA_H-elongata_contig17147.4403.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17147 2739..4260 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17147.4403.1 ID=prot_H-elongata_contig17147.4403.1|Name=mRNA_H-elongata_contig17147.4403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MMDGGAISWFSRVQKVTGAASSESEYVALAEILNELRFLRHIKEFMTPPI
DVAIKIHEGNEGAIKMVKNRFSSRRTRHVDIKHHIVRYAIEGESGSRRIR
SVQGTTRRHPHEVRRRQDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like