prot_H-elongata_contig170982.4382.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig170982.4382.1
Unique Nameprot_H-elongata_contig170982.4382.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.670e-34
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    1 PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGPTLFTVTVLAPETSWGG--GREEEFRLMAKSFRLTF 83
            PD+G+EWEL +AFED R+PGGLVYQFEYR++G+ +R PM NV VVAARG TLFTVTVLAPE SWGG  GR E+FR MA SFRL F
Sbjct:  519 PDSGREWELFEAFEDNREPGGLVYQFEYRIQGQRIRKPMRNVGVVAARGSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRLAF 603          
BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.830e-33
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    1 PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGPTLFTVTVLAPETSWGG--GREEEFRLMAKSFRLTF 83
            P +G+EWELL+AFED R+PGGLVYQFEYRV+G+ +R PM NV VVAARG TLFTVTVLAPE SWGG  GR E+FR MA SFRL +
Sbjct:  423 PGSGREWELLEAFEDNREPGGLVYQFEYRVQGQRIRKPMRNVGVVAARGSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRLAW 507          
BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Match: A0A7S2V6V0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-21
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    1 PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGPTLFTVTVLAPETSWGGGREEEFRLMAKSFRLTF 83
            P +GKEW LL+AFE+ R PG LVYQFEY +K    +  +HN+ VV AR   L+T+ VLAPE  W G +++E   +A SF+LTF
Sbjct:   88 PGSGKEWTLLNAFEEVRGPGYLVYQFEYIIKTS--KVELHNIGVVTARNNNLYTLIVLAPENEWFGQKQKELSQVASSFQLTF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170982.4382.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJV3_9PHAE3.670e-3472.94PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LPY6_ECTSI1.830e-3372.94PsbP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2V6V0_9STRA1.020e-2151.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 2..80
e-value: 6.0E-10
score: 39.5
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3D3.40.1000.10coord: 1..81
e-value: 2.3E-12
score: 49.1
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 2..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170982contigH-elongata_contig170982:247..1130 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170982.4382.1mRNA_H-elongata_contig170982.4382.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig170982 247..1130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig170982.4382.1 ID=prot_H-elongata_contig170982.4382.1|Name=mRNA_H-elongata_contig170982.4382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
PDAGKEWELLDAFEDTRKPGGLVYQFEYRVKGKGLRAPMHNVSVVAARGP
TLFTVTVLAPETSWGGGREEEFRLMAKSFRLTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand