prot_H-elongata_contig17090.4379.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17090.4379.1
Unique Nameprot_H-elongata_contig17090.4379.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
[Close]
BLAST of mRNA_H-elongata_contig17090.4379.1 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.350e-23
Identity = 48/78 (61.54%), Postives = 64/78 (82.05%), Query Frame = 0 
Query:    1 HFCTLAARGSPYVTFEFTGTTPTIRSDGDIIEIDGKKAKVSTSVHGTIFKLTMNQWKTWMVFTSESVTLKMTSKREME 78
            +F TL ARGSPY+TFEF G TP I+++GDI+EI+GKKA+V  S+  T FKL ++ W+TW+VFTSESVT K+TS +E+E
Sbjct:  230 NFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEVGASLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVE 307
[Close]
BLAST of mRNA_H-elongata_contig17090.4379.1 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.500e-22
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:    1 HFCTLAARGSPYVTFEFTGTTPTIRSDGDIIEIDGKKAKVSTSVHGTIFKLTMNQWKTWMVFTSESVTLKMTSKREME 78
            +F TL ARGSPY+TFEF G TP I+++GDI+EI+GKKA+   S+  T FKL ++ W+TW+VFTSESVT K+TS +E+E
Sbjct:  230 NFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEAGASLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVE 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17090.4379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC22_9PHAE4.350e-2361.54Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
D8LU99_ECTSI1.500e-2260.26Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040451Glycosyl hydrolase family 81, N-terminalPFAMPF03639Glyco_hydro_81coord: 8..75
e-value: 5.9E-8
score: 32.2
NoneNo IPR availableGENE3D2.70.98.30coord: 4..78
e-value: 5.9E-11
score: 44.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17090contigH-elongata_contig17090:6347..6966 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17090.4379.1mRNA_H-elongata_contig17090.4379.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17090 6347..6966 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17090.4379.1 ID=prot_H-elongata_contig17090.4379.1|Name=mRNA_H-elongata_contig17090.4379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
HFCTLAARGSPYVTFEFTGTTPTIRSDGDIIEIDGKKAKVSTSVHGTIFK
LTMNQWKTWMVFTSESVTLKMTSKREME
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040451GH81_N