prot_H-elongata_contig170667.4368.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig170667.4368.1
Unique Nameprot_H-elongata_contig170667.4368.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
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BLAST of mRNA_H-elongata_contig170667.4368.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-7
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:   35 GLARKLSCSVVSVVFTGVLLILFLQVGLILTAAPDWGSGTDKSMIDLEKENLEKL 89
            GLARKL+CS +S+V    +LIL +QV L LTA  DWG+ T ++MI LE+ NL KL
Sbjct:   22 GLARKLTCSEISIVAAATVLILAIQVALTLTAVDDWGADTREAMIQLEQANLLKL 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170667.4368.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWV2_ECTSI2.130e-756.36VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..93
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..41
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..67
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170667contigH-elongata_contig170667:1039..1317 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170667.4368.1mRNA_H-elongata_contig170667.4368.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig170667 780..1317 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig170667.4368.1 ID=prot_H-elongata_contig170667.4368.1|Name=mRNA_H-elongata_contig170667.4368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MIPQATTTTTTVSGTPHSATDFSDSGEATPVLRKGLARKLSCSVVSVVFT
GVLLILFLQVGLILTAAPDWGSGTDKSMIDLEKENLEKLSSDK
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