prot_H-elongata_contig17057.4363.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17057.4363.1
Unique Nameprot_H-elongata_contig17057.4363.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length379
Homology
[Close]
BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.280e-18
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0 
Query:  325 CEPCEKEFVSELARQAHLAAHVVCQESGCYFSALRKVVNYHHEIKHGQFSGSGFQ 379
            CEPCEKEF +E ARQAHL +HV C E GC FSALRK+VN HHE KHGQFSGSGFQ
Sbjct:   76 CEPCEKEFTTEAARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQFSGSGFQ 130
[Close]
BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.310e-17
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0 
Query:  325 CEPCEKEFVSELARQAHLAAHVVCQESGCYFSALRKVVNYHHEIKHGQFSGSGFQ 379
            CEPCEKEF +E ARQAHL +HV C E GC FSALRK+VN HHE KHGQ SGSGFQ
Sbjct:   59 CEPCEKEFTTETARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQLSGSGFQ 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK97_ECTSI2.280e-1878.18Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JLR5_9PHAE1.310e-1776.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 325..345

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17057contigH-elongata_contig17057:746..1882 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17057.4363.1mRNA_H-elongata_contig17057.4363.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17057 732..1882 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17057.4363.1 ID=prot_H-elongata_contig17057.4363.1|Name=mRNA_H-elongata_contig17057.4363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=379bp
MFPSAPQNQSQPSWRPRGQGQHVAMQHQHPLLSQQQQHQQQQHQQRLQHN
QNQPLWGTVIPRGSAPLLVGQQQQIQQQPQPWRGGQHAHPHAAPLQQQQP
LQQRTQFTLGVIHTQPHGVRDQQDRRGASHNEQNHLQGLQSVNPSQPQLL
SQTWPAQLPPAVSYCGPQHPRYTMTGNSSDGGVIAGGVLVSPWGQQLQSS
SVSPTIISSGQIVSSIDNSSSFNGSPDTGGQYSHRGVFAGQRARGTPPSS
PRIDGVSPTHGKKRKPRGTTGTTMPAPKRTPPHPAEDGGGARKRVEAVAA
TSSAGARSQAANVGGGGGGKGVPPCEPCEKEFVSELARQAHLAAHVVCQE
SGCYFSALRKVVNYHHEIKHGQFSGSGFQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type