prot_H-elongata_contig170280.4352.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig170280.4352.1
Unique Nameprot_H-elongata_contig170280.4352.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length250
Homology
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 6.130e-45
Identity = 84/145 (57.93%), Postives = 104/145 (71.72%), Query Frame = 0
Query:   52 DKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPAVQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRRRDTDSLPP 196
            +K   VSTVCGFC G+GC +T + P G+A P++HSTCP APR DAR  AV L+L SARA  +TSPCTN+V+KC  C Q+ YIW YGM DHV RCH  + LV  GT  A+KFK+  T+SE E+ KVL K KAG+ RRR   ++LPP
Sbjct: 1083 NKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226          
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.900e-41
Identity = 80/132 (60.61%), Postives = 93/132 (70.45%), Query Frame = 0
Query:   44 YVGGHILKDKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPAVQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENK 175
            Y GGHILKDK   VST CGFC G+G  TT + P GKA P++HSTCP APR DAR  AV L+L SARAG +TS CTN+V KC FC Q  YIWKY M+DH+ RCH  D LV  GT  A+ FK+  T+SE E+ K
Sbjct:  401 YRGGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKAK 528          
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 7.770e-26
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 0
Query:  120 IVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRR-RDTDSLPPGARRSVSGNGAVASGVPGTR 216
            +V+KC+FC Q+TYIWKYGM++HV RCH ED LV AGT   ++FK+ YT+SE E+ KVL+KFKAG+ RRR +  ++LP GA  S  GNG     + GTR
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTR 97          
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.240e-20
Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = 0
Query:  120 IVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRR-RDTDSLPPGARRSVSGNGAVASGVPGTR 216
            +V+KC  C Q  YIWKYGM++HV R H ED  V AGT   +KFK+ Y++SE E+ K L KFKAGK R+R +  + LPPGA     GNGA    + GTR
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTR 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE6.130e-4557.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE2.900e-4160.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI7.770e-2656.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE4.240e-2052.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170280contigH-elongata_contig170280:445..1357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170280.4352.1mRNA_H-elongata_contig170280.4352.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig170280 445..1357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig170280.4352.1 ID=prot_H-elongata_contig170280.4352.1|Name=mRNA_H-elongata_contig170280.4352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp
PISCGVFKISADMVGVALAGGAGAEKVPCKLCDQRLPRSKIRMYVGGHIL
KDKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPA
VQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDT
LVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRRRDTDSLPPGARR
SVSGNGAVASGVPGTRPQGEQEEEEKEGDDDDDDEEEEEEDEDEDENQED
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