prot_H-elongata_contig1702.4346.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1702.4346.1
Unique Nameprot_H-elongata_contig1702.4346.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
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BLAST of mRNA_H-elongata_contig1702.4346.1 vs. uniprot
Match: A0A6H5K0N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0N2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.420e-27
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 0 
Query:    3 GDGFVDLQVAILCNQAACHLKLGDGAGALKVADRASAFK-VPTGSAAGMKVAYRRACALEAVGDWDEARRAFKSVLEVDPKNSKGSQVIA 91
            GD FVDLQVA+LCNQAAC LK+G    AL  A+RAS+ K V     AG+K AYRRACALEAVGDW EARRAF++VL+VDPKNS+  Q +A
Sbjct:  449 GDKFVDLQVAVLCNQAACFLKMGQALSALAAAERASSLKAVAADCPAGIKAAYRRACALEAVGDWGEARRAFRNVLDVDPKNSQCRQGLA 538
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1702.4346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0N2_9PHAE3.420e-2766.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 50..83
e-value: 0.0042
score: 26.3
coord: 11..44
e-value: 140.0
score: 5.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 50..83
score: 9.44
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..100
e-value: 4.2E-15
score: 57.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 11..85
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 52..83
e-value: 3.5E-6
score: 26.7
NoneNo IPR availablePANTHERPTHR43811FAMILY NOT NAMEDcoord: 11..85
NoneNo IPR availablePANTHERPTHR43811:SF35FK506-BINDING PROTEIN-LIKEcoord: 11..85
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 50..83
score: 10.17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1702contigH-elongata_contig1702:2429..2749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1702.4346.1mRNA_H-elongata_contig1702.4346.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1702 2429..2749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1702.4346.1 ID=prot_H-elongata_contig1702.4346.1|Name=mRNA_H-elongata_contig1702.4346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
AEGDGFVDLQVAILCNQAACHLKLGDGAGALKVADRASAFKVPTGSAAGM
KVAYRRACALEAVGDWDEARRAFKSVLEVDPKNSKGSQVIANSKANNLTT
FLRFAAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013105TPR_2
IPR013026TPR-contain_dom