prot_H-elongata_contig17001.4340.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17001.4340.1
Unique Nameprot_H-elongata_contig17001.4340.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length251
Homology
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BLAST of mRNA_H-elongata_contig17001.4340.1 vs. uniprot
Match: D7FVC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVC1_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.390e-49
Identity = 89/185 (48.11%), Postives = 128/185 (69.19%), Query Frame = 0 
Query:   66 LVALVGAIRPWTTQKALLAMVTLAAILRIAWTIVAILTWNAALGVVSMDVHKSLHVVFYGLDYFQAAAAFTLYTILARFWAELAYAARHGSPPARTDRGSGSGRADQYRPVGTPVLLWNVTRAVQHAASTMAFVFAAFATLLQATIWARDPTYVDEWTGFIEAGAYVLASVVMITTAYCAIIELR 250
            ++A++ A RP+TTQKALL+M+TL+A L IAW+++A   W+   G + + V  +L V FYG D+F AA  FTLYTILA+FWA+LA++AR G+  +R       G  D+YRP GTP L+W +TR VQ  +ST+ F  AA AT+ QA +   D  Y++ WT ++E G ++LA+ VM+T AY A++ELR
Sbjct:    5 VMAMLAAFRPFTTQKALLSMLTLSAALSIAWSVLAYEAWDLLHGTLDVSVSVALRVAFYGTDFFLAATTFTLYTILAKFWADLAFSARQGAGASRP-----LGGGDEYRPRGTPTLIWKITRGVQRVSSTVVFAAAALATVFQAVLVTLDSMYLNLWTAYVEGGVFILAAFVMVTAAYYAVVELR 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17001.4340.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVC1_ECTSI1.390e-4948.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 147..191
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 109..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 247..250
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 214..224
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 225..246
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..146
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 228..247
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 191..213
NoneNo IPR availableTMHMMTMhelixcoord: 119..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17001contigH-elongata_contig17001:3018..5944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17001.4340.1mRNA_H-elongata_contig17001.4340.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17001 1998..5969 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17001.4340.1 ID=prot_H-elongata_contig17001.4340.1|Name=mRNA_H-elongata_contig17001.4340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
MVTARLWLLAMVILVVAINGCLLFTSGLALLRVLRAAARDAYSSPRRRLL
ALDDGGAARRGSGGGLVALVGAIRPWTTQKALLAMVTLAAILRIAWTIVA
ILTWNAALGVVSMDVHKSLHVVFYGLDYFQAAAAFTLYTILARFWAELAY
AARHGSPPARTDRGSGSGRADQYRPVGTPVLLWNVTRAVQHAASTMAFVF
AAFATLLQATIWARDPTYVDEWTGFIEAGAYVLASVVMITTAYCAIIELR
*
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